Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13171 | 5' | -64.6 | NC_003401.1 | + | 30513 | 0.66 | 0.493903 |
Target: 5'- -cGCCCCaccGGCGCCUcaaccUGGCCucGCuCCUg -3' miRNA: 3'- caUGGGGgc-CCGUGGA-----ACCGG--CG-GGA- -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 74488 | 0.66 | 0.48474 |
Target: 5'- -cACCCCgCGGGUACCcuaGCCGCgUCa -3' miRNA: 3'- caUGGGG-GCCCGUGGaacCGGCG-GGa -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 118848 | 0.66 | 0.457756 |
Target: 5'- --uCCCCCGuGCGCauc-GCCGCCCUc -3' miRNA: 3'- cauGGGGGCcCGUGgaacCGGCGGGA- -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 125905 | 0.66 | 0.457756 |
Target: 5'- -cGCCgUCGaGGcCGCCagcagUGGCCGCCUUg -3' miRNA: 3'- caUGGgGGC-CC-GUGGa----ACCGGCGGGA- -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 125225 | 0.66 | 0.448941 |
Target: 5'- -cACCggaCGGGCGCCaccUGGCCuCCCUg -3' miRNA: 3'- caUGGgg-GCCCGUGGa--ACCGGcGGGA- -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 118021 | 0.66 | 0.448941 |
Target: 5'- cGUACCCaUCGgccgcucuuuGGCGCCggGGUCGUCCg -3' miRNA: 3'- -CAUGGG-GGC----------CCGUGGaaCCGGCGGGa -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 120554 | 0.66 | 0.448941 |
Target: 5'- aGUGCCCaCCGGG-ACCaUUGaccCCGUCCUg -3' miRNA: 3'- -CAUGGG-GGCCCgUGG-AACc--GGCGGGA- -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 133380 | 0.67 | 0.406332 |
Target: 5'- -gGCUgCUGGGCugCUaguagGGCUGCCUg -3' miRNA: 3'- caUGGgGGCCCGugGAa----CCGGCGGGa -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 665 | 0.67 | 0.406332 |
Target: 5'- -gGCUgCUGGGCugCUaguagGGCUGCCUg -3' miRNA: 3'- caUGGgGGCCCGugGAa----CCGGCGGGa -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 15055 | 0.67 | 0.39812 |
Target: 5'- -gGCCgUCCuGGCAUCUcUGGCCGCCa- -3' miRNA: 3'- caUGG-GGGcCCGUGGA-ACCGGCGGga -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 48923 | 0.68 | 0.382017 |
Target: 5'- gGUGCUCCCGGGgGgCUUuguuauuaaaGGCCGCUa- -3' miRNA: 3'- -CAUGGGGGCCCgUgGAA----------CCGGCGGga -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 118120 | 0.68 | 0.374131 |
Target: 5'- ---aCCCCGGGCGgCaaaaGCCGCCCc -3' miRNA: 3'- caugGGGGCCCGUgGaac-CGGCGGGa -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 132531 | 0.68 | 0.358692 |
Target: 5'- --cCCCCCGGGC-CCggGGCC-CCa- -3' miRNA: 3'- cauGGGGGCCCGuGGaaCCGGcGGga -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 132819 | 0.68 | 0.358692 |
Target: 5'- -gGCgCCCCGGGC-CCc-GGCCcCCCUc -3' miRNA: 3'- caUG-GGGGCCCGuGGaaCCGGcGGGA- -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 565 | 0.68 | 0.358692 |
Target: 5'- -gGCUCCUGGGCugCUaguagGGCUGCUg- -3' miRNA: 3'- caUGGGGGCCCGugGAa----CCGGCGGga -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 133320 | 0.68 | 0.358692 |
Target: 5'- -gGCUCCUGGGCugCUaguagGGCUGCUg- -3' miRNA: 3'- caUGGGGGCCCGugGAa----CCGGCGGga -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 605 | 0.68 | 0.358692 |
Target: 5'- -gGCUCCUGGGCugCUaguagGGCUGCUg- -3' miRNA: 3'- caUGGGGGCCCGugGAa----CCGGCGGga -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 133280 | 0.68 | 0.358692 |
Target: 5'- -gGCUCCUGGGCugCUaguagGGCUGCUg- -3' miRNA: 3'- caUGGGGGCCCGugGAa----CCGGCGGga -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 21101 | 0.68 | 0.358692 |
Target: 5'- ---aCCCCGGGagacuuugugcaCACCUUGGgugaCGCCCa -3' miRNA: 3'- caugGGGGCCC------------GUGGAACCg---GCGGGa -5' |
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13171 | 5' | -64.6 | NC_003401.1 | + | 118609 | 0.68 | 0.351141 |
Target: 5'- -gACCCCgCGaucGCACCuUUGGCCGgCCg -3' miRNA: 3'- caUGGGG-GCc--CGUGG-AACCGGCgGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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