miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13179 3' -50 NC_003401.1 + 97915 0.67 0.990523
Target:  5'- aCAAuuCGugGUgGCCGGuaaccAGACGACGGGc -3'
miRNA:   3'- aGUU--GCugCGaCGGCU-----UUUGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 99925 0.67 0.989169
Target:  5'- gCAACGACGCaccagGCCGAcuGCagguuCGGAc -3'
miRNA:   3'- aGUUGCUGCGa----CGGCUuuUGcu---GUCU- -5'
13179 3' -50 NC_003401.1 + 116663 0.67 0.987668
Target:  5'- --uACGGCGCUGCaCGGuuGGAgGGCGGu -3'
miRNA:   3'- aguUGCUGCGACG-GCU--UUUgCUGUCu -5'
13179 3' -50 NC_003401.1 + 132662 0.68 0.986011
Target:  5'- gUCGgggcGCGGCGCcGCCGGGcuCGGcCGGAc -3'
miRNA:   3'- -AGU----UGCUGCGaCGGCUUuuGCU-GUCU- -5'
13179 3' -50 NC_003401.1 + 54349 0.68 0.984189
Target:  5'- cCGGCGAuCGaguuUGUCGGAGAgGACAGGc -3'
miRNA:   3'- aGUUGCU-GCg---ACGGCUUUUgCUGUCU- -5'
13179 3' -50 NC_003401.1 + 64732 0.68 0.984189
Target:  5'- -aGGCGACGCUGau--AAACGgACAGAg -3'
miRNA:   3'- agUUGCUGCGACggcuUUUGC-UGUCU- -5'
13179 3' -50 NC_003401.1 + 8740 0.68 0.984189
Target:  5'- aCGACGGCGCgucaGCCGGucGCcgccACAGGg -3'
miRNA:   3'- aGUUGCUGCGa---CGGCUuuUGc---UGUCU- -5'
13179 3' -50 NC_003401.1 + 23854 0.68 0.983012
Target:  5'- cCAAcCGGCGCUGCCGGuccgccauuuugccaAAucgcgGCGugGGGg -3'
miRNA:   3'- aGUU-GCUGCGACGGCU---------------UU-----UGCugUCU- -5'
13179 3' -50 NC_003401.1 + 7529 0.68 0.982192
Target:  5'- gUUGGCGGCGgUGCCGAcauAAugGACc-- -3'
miRNA:   3'- -AGUUGCUGCgACGGCU---UUugCUGucu -5'
13179 3' -50 NC_003401.1 + 100987 0.68 0.980011
Target:  5'- aCGACGAUGCgauauccGCCGAGgugaucuggaugGACGACGa- -3'
miRNA:   3'- aGUUGCUGCGa------CGGCUU------------UUGCUGUcu -5'
13179 3' -50 NC_003401.1 + 66380 0.68 0.980011
Target:  5'- gUCccCGGCGCUaagGCCGugaauGCGGCAGGc -3'
miRNA:   3'- -AGuuGCUGCGA---CGGCuuu--UGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 7018 0.68 0.980011
Target:  5'- gCGACGACGCUGUCcacaaucAUGugGGAc -3'
miRNA:   3'- aGUUGCUGCGACGGcuuu---UGCugUCU- -5'
13179 3' -50 NC_003401.1 + 132485 0.68 0.977638
Target:  5'- cCGGCGGgGCggaggGCCGGGAGcCGGgGGAg -3'
miRNA:   3'- aGUUGCUgCGa----CGGCUUUU-GCUgUCU- -5'
13179 3' -50 NC_003401.1 + 74555 0.68 0.977638
Target:  5'- cCAACagauACGuCUGCCGAAGgGCGGCGGu -3'
miRNA:   3'- aGUUGc---UGC-GACGGCUUU-UGCUGUCu -5'
13179 3' -50 NC_003401.1 + 118385 0.69 0.975063
Target:  5'- gCGGCGACGCUGaCGc---CGGCGGGu -3'
miRNA:   3'- aGUUGCUGCGACgGCuuuuGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 94746 0.69 0.972278
Target:  5'- -gGACGGCGCcuaCCGAGAGCGuuAGGc -3'
miRNA:   3'- agUUGCUGCGac-GGCUUUUGCugUCU- -5'
13179 3' -50 NC_003401.1 + 21162 0.69 0.969276
Target:  5'- aUAACGAUGC-GCCGAu--CGugGGGc -3'
miRNA:   3'- aGUUGCUGCGaCGGCUuuuGCugUCU- -5'
13179 3' -50 NC_003401.1 + 9402 0.7 0.954954
Target:  5'- aUUAACG-CGCUGCUGA--GCGAUcuAGAc -3'
miRNA:   3'- -AGUUGCuGCGACGGCUuuUGCUG--UCU- -5'
13179 3' -50 NC_003401.1 + 88519 0.7 0.941629
Target:  5'- aCGAaGGCGCcGUgGGAGGCGACGGGg -3'
miRNA:   3'- aGUUgCUGCGaCGgCUUUUGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 121688 0.71 0.936674
Target:  5'- --uGCGAUGCgggggaUGCCGggGACGACccuGAc -3'
miRNA:   3'- aguUGCUGCG------ACGGCuuUUGCUGu--CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.