miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13179 5' -51.5 NC_003401.1 + 44100 0.66 0.989478
Target:  5'- aCCuCGgcuaGGUUGacgucGGugGGCGUCGUCu -3'
miRNA:   3'- gGGuGUa---CUAACa----CCugUCGCAGCAG- -5'
13179 5' -51.5 NC_003401.1 + 72350 0.66 0.989478
Target:  5'- gCCCACAgggGGUgaaccagGUGccACGGCGUCGg- -3'
miRNA:   3'- -GGGUGUa--CUAa------CACc-UGUCGCAGCag -5'
13179 5' -51.5 NC_003401.1 + 105348 0.66 0.989478
Target:  5'- gCCACAUGGcgGUGacCAGUGUUGUg -3'
miRNA:   3'- gGGUGUACUaaCACcuGUCGCAGCAg -5'
13179 5' -51.5 NC_003401.1 + 23019 0.66 0.988027
Target:  5'- cCCCGCGcGucUG-GGGguGCGUUGUCu -3'
miRNA:   3'- -GGGUGUaCuaACaCCUguCGCAGCAG- -5'
13179 5' -51.5 NC_003401.1 + 75668 0.66 0.987085
Target:  5'- cCCCACGuauggaguUGAUUGUuugaucgauggcccuGGACuccaCGUCGUCc -3'
miRNA:   3'- -GGGUGU--------ACUAACA---------------CCUGuc--GCAGCAG- -5'
13179 5' -51.5 NC_003401.1 + 39389 0.66 0.984293
Target:  5'- gCCCGCGUGuccugcuacgGUGG-CAGCGaacgcccCGUCa -3'
miRNA:   3'- -GGGUGUACuaa-------CACCuGUCGCa------GCAG- -5'
13179 5' -51.5 NC_003401.1 + 8760 0.67 0.978335
Target:  5'- aCCgGCGUGAggcaGU--GCAGCGUCGUg -3'
miRNA:   3'- -GGgUGUACUaa--CAccUGUCGCAGCAg -5'
13179 5' -51.5 NC_003401.1 + 74278 0.67 0.972021
Target:  5'- gCCCACGUGAcagaaucaucGGAC-GCGaUCGUCg -3'
miRNA:   3'- -GGGUGUACUaaca------CCUGuCGC-AGCAG- -5'
13179 5' -51.5 NC_003401.1 + 123425 0.67 0.967135
Target:  5'- aCUACGUGGUgggUGUGGugGCAGCGgccgcCGUUu -3'
miRNA:   3'- gGGUGUACUA---ACACC--UGUCGCa----GCAG- -5'
13179 5' -51.5 NC_003401.1 + 12498 0.67 0.967135
Target:  5'- aCCCGCGUuucGGUgGUGGGCuGGCGg-GUCg -3'
miRNA:   3'- -GGGUGUA---CUAaCACCUG-UCGCagCAG- -5'
13179 5' -51.5 NC_003401.1 + 68699 0.68 0.952355
Target:  5'- gCCAaGUGuUUGgGGGCguGGCGUCGUCu -3'
miRNA:   3'- gGGUgUACuAACaCCUG--UCGCAGCAG- -5'
13179 5' -51.5 NC_003401.1 + 40018 0.69 0.938713
Target:  5'- uCCgACAUGGUgg-GGGCGGUGU-GUCa -3'
miRNA:   3'- -GGgUGUACUAacaCCUGUCGCAgCAG- -5'
13179 5' -51.5 NC_003401.1 + 13671 0.71 0.884102
Target:  5'- aUCCugGUGAUUGUGG-CGGuCGUCc-- -3'
miRNA:   3'- -GGGugUACUAACACCuGUC-GCAGcag -5'
13179 5' -51.5 NC_003401.1 + 13036 0.75 0.681505
Target:  5'- aCUGCGUGGcgGUGGACcaGGCGUcCGUCa -3'
miRNA:   3'- gGGUGUACUaaCACCUG--UCGCA-GCAG- -5'
13179 5' -51.5 NC_003401.1 + 6858 1.13 0.004172
Target:  5'- uCCCACAUGAUUGUGGACAGCGUCGUCg -3'
miRNA:   3'- -GGGUGUACUAACACCUGUCGCAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.