miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1318 3' -48.6 NC_001331.1 + 4727 1.13 0.00016
Target:  5'- cACAACAUCAAGGUCGACACCAUUGGCu -3'
miRNA:   3'- -UGUUGUAGUUCCAGCUGUGGUAACCG- -5'
1318 3' -48.6 NC_001331.1 + 3594 0.73 0.166297
Target:  5'- -uGGCAUUgcuGGcCGGCACUAUUGGCu -3'
miRNA:   3'- ugUUGUAGuu-CCaGCUGUGGUAACCG- -5'
1318 3' -48.6 NC_001331.1 + 4761 0.67 0.420634
Target:  5'- uCAAgAUCGAGGugUCGccccACGCCAUUgacGGCg -3'
miRNA:   3'- uGUUgUAGUUCC--AGC----UGUGGUAA---CCG- -5'
1318 3' -48.6 NC_001331.1 + 966 0.66 0.49338
Target:  5'- cCGAUGgcCAGGG-CGAUaugaagGCCAUUGGCg -3'
miRNA:   3'- uGUUGUa-GUUCCaGCUG------UGGUAACCG- -5'
1318 3' -48.6 NC_001331.1 + 4244 0.66 0.506072
Target:  5'- aGCGGCggUAGGGgUGcCGCCAUgaggGGCg -3'
miRNA:   3'- -UGUUGuaGUUCCaGCuGUGGUAa---CCG- -5'
1318 3' -48.6 NC_001331.1 + 4832 0.74 0.137695
Target:  5'- cCAGCA-CGcccuggaggauacgcGGGUCGGCGCCGUcaaUGGCg -3'
miRNA:   3'- uGUUGUaGU---------------UCCAGCUGUGGUA---ACCG- -5'
1318 3' -48.6 NC_001331.1 + 3100 0.72 0.202089
Target:  5'- aGCGACuccagAUCGAGGUUGAUgauuuccGCCGUguugGGCa -3'
miRNA:   3'- -UGUUG-----UAGUUCCAGCUG-------UGGUAa---CCG- -5'
1318 3' -48.6 NC_001331.1 + 347 0.69 0.324652
Target:  5'- -gGGCuUgGGcGGUCGGCGCCAUcGGCu -3'
miRNA:   3'- ugUUGuAgUU-CCAGCUGUGGUAaCCG- -5'
1318 3' -48.6 NC_001331.1 + 2677 0.68 0.386771
Target:  5'- cGCGGCGUaCA---UCGACGCCuuggUGGCg -3'
miRNA:   3'- -UGUUGUA-GUuccAGCUGUGGua--ACCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.