miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13180 5' -60.3 NC_003401.1 + 85696 0.66 0.747281
Target:  5'- --gGCCUUCugCGcgCCAGACuuAUGGCg -3'
miRNA:   3'- uggCGGGAGugGCa-GGUCUGc-UGCCG- -5'
13180 5' -60.3 NC_003401.1 + 132367 0.66 0.747281
Target:  5'- cGCCGgCCgggCGCC-UCCGGGCc-CGGCc -3'
miRNA:   3'- -UGGCgGGa--GUGGcAGGUCUGcuGCCG- -5'
13180 5' -60.3 NC_003401.1 + 43157 0.66 0.737859
Target:  5'- cCCGCCUcacgggaaCGCCGgcgaCCAGcGCGACGGa -3'
miRNA:   3'- uGGCGGGa-------GUGGCa---GGUC-UGCUGCCg -5'
13180 5' -60.3 NC_003401.1 + 61582 0.66 0.737859
Target:  5'- uACC-CCUcuUUACCG-CCAGGgGGCGGUu -3'
miRNA:   3'- -UGGcGGG--AGUGGCaGGUCUgCUGCCG- -5'
13180 5' -60.3 NC_003401.1 + 121750 0.66 0.737859
Target:  5'- cACCGgCCagAcCCG-CUuGGCGACGGCg -3'
miRNA:   3'- -UGGCgGGagU-GGCaGGuCUGCUGCCG- -5'
13180 5' -60.3 NC_003401.1 + 21777 0.66 0.737859
Target:  5'- gGCCGUCCgCugCGcgugCCGcGGCGAccaCGGCg -3'
miRNA:   3'- -UGGCGGGaGugGCa---GGU-CUGCU---GCCG- -5'
13180 5' -60.3 NC_003401.1 + 133712 0.66 0.718762
Target:  5'- gGCCggguGCCCg-GCgGUCCGGGCGGgGGa -3'
miRNA:   3'- -UGG----CGGGagUGgCAGGUCUGCUgCCg -5'
13180 5' -60.3 NC_003401.1 + 17463 0.66 0.718762
Target:  5'- gUgGCCCUUAUCGcCCcguuGGAuucCGGCGGCg -3'
miRNA:   3'- uGgCGGGAGUGGCaGG----UCU---GCUGCCG- -5'
13180 5' -60.3 NC_003401.1 + 132443 0.66 0.718762
Target:  5'- gGCCGCCCccgggUGCCGcuccgCCGGGCc-CGGCc -3'
miRNA:   3'- -UGGCGGGa----GUGGCa----GGUCUGcuGCCG- -5'
13180 5' -60.3 NC_003401.1 + 15546 0.66 0.709105
Target:  5'- uCC-CCCUCugUuucgcucagGUCCGGGCGGCagGGCu -3'
miRNA:   3'- uGGcGGGAGugG---------CAGGUCUGCUG--CCG- -5'
13180 5' -60.3 NC_003401.1 + 23757 0.66 0.709105
Target:  5'- uGCUGCCagguggcaGCCGUCCAGGCG-CGuCa -3'
miRNA:   3'- -UGGCGGgag-----UGGCAGGUCUGCuGCcG- -5'
13180 5' -60.3 NC_003401.1 + 32486 0.66 0.699387
Target:  5'- cACCGCCCggcacCACCGcCCuuuuAGGCG--GGCa -3'
miRNA:   3'- -UGGCGGGa----GUGGCaGG----UCUGCugCCG- -5'
13180 5' -60.3 NC_003401.1 + 71828 0.66 0.689615
Target:  5'- uCgGCCCUCgguGCUGUCCca--GGCGGCu -3'
miRNA:   3'- uGgCGGGAG---UGGCAGGucugCUGCCG- -5'
13180 5' -60.3 NC_003401.1 + 101176 0.66 0.689615
Target:  5'- cGCCGUUCUCugCGUUC-GACGACc-- -3'
miRNA:   3'- -UGGCGGGAGugGCAGGuCUGCUGccg -5'
13180 5' -60.3 NC_003401.1 + 63754 0.66 0.686674
Target:  5'- uCCGCCCUCuGCCGgugaUCUAGAUauaucaccugaccaGGCGGg -3'
miRNA:   3'- uGGCGGGAG-UGGC----AGGUCUG--------------CUGCCg -5'
13180 5' -60.3 NC_003401.1 + 105031 0.67 0.679799
Target:  5'- cACCGCCCaCGCaaaCCgGGACG-CGGCa -3'
miRNA:   3'- -UGGCGGGaGUGgcaGG-UCUGCuGCCG- -5'
13180 5' -60.3 NC_003401.1 + 116503 0.67 0.679799
Target:  5'- aACCGCCCUCcaACCGUgCAG-CGcCGu- -3'
miRNA:   3'- -UGGCGGGAG--UGGCAgGUCuGCuGCcg -5'
13180 5' -60.3 NC_003401.1 + 28308 0.67 0.668958
Target:  5'- cACCGCCCgucgcgcCACCGuucccuuUCCAGuCGGCGuuuGCc -3'
miRNA:   3'- -UGGCGGGa------GUGGC-------AGGUCuGCUGC---CG- -5'
13180 5' -60.3 NC_003401.1 + 64019 0.67 0.660063
Target:  5'- gGCCGCUcugguuaaaggaCUCACCGUCCcGuGCGuGCGGa -3'
miRNA:   3'- -UGGCGG------------GAGUGGCAGGuC-UGC-UGCCg -5'
13180 5' -60.3 NC_003401.1 + 11248 0.67 0.65016
Target:  5'- gGCCGCCUcgaaaCACUGggCCAGcGCGACguuGGCg -3'
miRNA:   3'- -UGGCGGGa----GUGGCa-GGUC-UGCUG---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.