miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13183 3' -54.3 NC_003401.1 + 126375 0.66 0.944393
Target:  5'- gGUGGUGuccggccacgacGUCaGCGAcggaGGCAUGGUGGUu -3'
miRNA:   3'- -CACUAU------------UAG-CGCUag--CCGUGCCGCCA- -5'
13183 3' -54.3 NC_003401.1 + 27872 0.66 0.939713
Target:  5'- -cGGUGGUUGCGGUCGuuGguCGGCGu- -3'
miRNA:   3'- caCUAUUAGCGCUAGC--CguGCCGCca -5'
13183 3' -54.3 NC_003401.1 + 40314 0.66 0.929612
Target:  5'- -cGAUGAUCGgGAcgCGGU--GGCGGa -3'
miRNA:   3'- caCUAUUAGCgCUa-GCCGugCCGCCa -5'
13183 3' -54.3 NC_003401.1 + 107893 0.66 0.92908
Target:  5'- -aGAUAAuuacguuUCGCGAU-GGCAUacugGGCGGg -3'
miRNA:   3'- caCUAUU-------AGCGCUAgCCGUG----CCGCCa -5'
13183 3' -54.3 NC_003401.1 + 82580 0.67 0.918517
Target:  5'- aGUGccugcUCgGCGAUCGGUGCGGCGc- -3'
miRNA:   3'- -CACuauu-AG-CGCUAGCCGUGCCGCca -5'
13183 3' -54.3 NC_003401.1 + 18965 0.67 0.918517
Target:  5'- -cGAUccgCGCGcUCGaCACGGCGGg -3'
miRNA:   3'- caCUAuuaGCGCuAGCcGUGCCGCCa -5'
13183 3' -54.3 NC_003401.1 + 126461 0.67 0.912598
Target:  5'- cGUGAUGAcgacUGCGuuaaaCGGCACGGgGGc -3'
miRNA:   3'- -CACUAUUa---GCGCua---GCCGUGCCgCCa -5'
13183 3' -54.3 NC_003401.1 + 122724 0.67 0.906432
Target:  5'- -------cCGCGGcucacCGGCGCGGCGGa -3'
miRNA:   3'- cacuauuaGCGCUa----GCCGUGCCGCCa -5'
13183 3' -54.3 NC_003401.1 + 117808 0.68 0.872009
Target:  5'- aUGGg---UGCGAUgGGCAcCGGCGGc -3'
miRNA:   3'- cACUauuaGCGCUAgCCGU-GCCGCCa -5'
13183 3' -54.3 NC_003401.1 + 121142 0.68 0.848638
Target:  5'- aUGGgguAUCGCGGcgGGCGCGGgGGg -3'
miRNA:   3'- cACUau-UAGCGCUagCCGUGCCgCCa -5'
13183 3' -54.3 NC_003401.1 + 18893 0.69 0.823432
Target:  5'- -aGGUAuucGUgGCGAUCGuuACGGUGGUg -3'
miRNA:   3'- caCUAU---UAgCGCUAGCcgUGCCGCCA- -5'
13183 3' -54.3 NC_003401.1 + 30743 0.69 0.823432
Target:  5'- cGUGAUAuaCGCGAcgUUGGCACaGaGCGGa -3'
miRNA:   3'- -CACUAUuaGCGCU--AGCCGUG-C-CGCCa -5'
13183 3' -54.3 NC_003401.1 + 122461 0.7 0.768381
Target:  5'- uUGAauuUCGCGggCGGCugGGCuuGGUg -3'
miRNA:   3'- cACUauuAGCGCuaGCCGugCCG--CCA- -5'
13183 3' -54.3 NC_003401.1 + 110558 0.73 0.5843
Target:  5'- gGUGGcUGGUCGCGuguuacgCGGUAcCGGCGGUg -3'
miRNA:   3'- -CACU-AUUAGCGCua-----GCCGU-GCCGCCA- -5'
13183 3' -54.3 NC_003401.1 + 11548 1.07 0.004874
Target:  5'- cGUGAUAAUCGCGAUCGGCACGGCGGUu -3'
miRNA:   3'- -CACUAUUAGCGCUAGCCGUGCCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.