miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13183 5' -60.7 NC_003401.1 + 73186 0.66 0.714504
Target:  5'- gUCACCACCUCCucgacuacaggaacGGGCacgccuccuGUGACUACa -3'
miRNA:   3'- -AGUGGUGGGGGuu------------CCCG---------CGCUGGUGg -5'
13183 5' -60.7 NC_003401.1 + 27274 0.66 0.713537
Target:  5'- gCACCAagaCCCAAcacGGccaaaGCGCGACC-CCa -3'
miRNA:   3'- aGUGGUgg-GGGUU---CC-----CGCGCUGGuGG- -5'
13183 5' -60.7 NC_003401.1 + 117932 0.66 0.713537
Target:  5'- cCGCgGCCcaaaucuggggCCCAugguGGcGCGCGGCCcCCa -3'
miRNA:   3'- aGUGgUGG-----------GGGUu---CC-CGCGCUGGuGG- -5'
13183 5' -60.7 NC_003401.1 + 106927 0.66 0.713537
Target:  5'- cUCGCCGCaCCCCAcaccucgaagaGGGGCcaCGGgaGCCu -3'
miRNA:   3'- -AGUGGUG-GGGGU-----------UCCCGc-GCUggUGG- -5'
13183 5' -60.7 NC_003401.1 + 123033 0.66 0.712568
Target:  5'- -uGCCACCCUgGaggacgaGGGGUGCuACCugUg -3'
miRNA:   3'- agUGGUGGGGgU-------UCCCGCGcUGGugG- -5'
13183 5' -60.7 NC_003401.1 + 132527 0.66 0.712568
Target:  5'- gCGCgGCgCggggcggCCGGGGGCgGCGGCCGCg -3'
miRNA:   3'- aGUGgUGgG-------GGUUCCCG-CGCUGGUGg -5'
13183 5' -60.7 NC_003401.1 + 93033 0.66 0.703825
Target:  5'- aUACCGCCCCUGuucGGUGC--CCGCCc -3'
miRNA:   3'- aGUGGUGGGGGUuc-CCGCGcuGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 20466 0.66 0.703825
Target:  5'- cCACCACUCCacucucugucGGGuGCGUGAgUACCc -3'
miRNA:   3'- aGUGGUGGGGgu--------UCC-CGCGCUgGUGG- -5'
13183 5' -60.7 NC_003401.1 + 132377 0.66 0.694057
Target:  5'- -gGCCGCCCCgCGccGcGCGCcgGGCCGCUu -3'
miRNA:   3'- agUGGUGGGG-GUucC-CGCG--CUGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 108601 0.66 0.694057
Target:  5'- -uGCCAgCUCCGAGGGUGgugGugUGCCu -3'
miRNA:   3'- agUGGUgGGGGUUCCCGCg--CugGUGG- -5'
13183 5' -60.7 NC_003401.1 + 119279 0.66 0.691117
Target:  5'- -gGCCGUCUCCAGGcgcgacguggccaaGGuCGUGGCCGCCa -3'
miRNA:   3'- agUGGUGGGGGUUC--------------CC-GCGCUGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 63668 0.66 0.68424
Target:  5'- -uGCCGCCUgCAAGaGGCGCGcguCACg -3'
miRNA:   3'- agUGGUGGGgGUUC-CCGCGCug-GUGg -5'
13183 5' -60.7 NC_003401.1 + 105027 0.66 0.68424
Target:  5'- aCACCACCgCCCAcgcaaaccGGGaCGCGGCauuuaACa -3'
miRNA:   3'- aGUGGUGG-GGGUu-------CCC-GCGCUGg----UGg -5'
13183 5' -60.7 NC_003401.1 + 89131 0.66 0.674382
Target:  5'- -gGCgACCCCCAAGGuaaagaGUGACUGCg -3'
miRNA:   3'- agUGgUGGGGGUUCCcg----CGCUGGUGg -5'
13183 5' -60.7 NC_003401.1 + 98520 0.66 0.674382
Target:  5'- gCGCCAC-----AGGGCGCGAUCGCUc -3'
miRNA:   3'- aGUGGUGgggguUCCCGCGCUGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 103104 0.66 0.674382
Target:  5'- -gAUCACCCaauuCAAcGGCcacgaGCGACCGCCg -3'
miRNA:   3'- agUGGUGGGg---GUUcCCG-----CGCUGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 115100 0.66 0.674382
Target:  5'- gCACguCCCCCGguGGGGUGCaaguCCcCCg -3'
miRNA:   3'- aGUGguGGGGGU--UCCCGCGcu--GGuGG- -5'
13183 5' -60.7 NC_003401.1 + 128163 0.66 0.664491
Target:  5'- aCGCUGCUgCCCGGGGGCGaaaucaGAUCgGCCc -3'
miRNA:   3'- aGUGGUGG-GGGUUCCCGCg-----CUGG-UGG- -5'
13183 5' -60.7 NC_003401.1 + 100604 0.66 0.664491
Target:  5'- gCACCAUcgaagacaUCCCAAGcccGcCGCGAUCGCCg -3'
miRNA:   3'- aGUGGUG--------GGGGUUCc--C-GCGCUGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 104307 0.66 0.664491
Target:  5'- cUCG-CGCCCCUcAGGGUaaaggGCGgaaaaACCACCg -3'
miRNA:   3'- -AGUgGUGGGGGuUCCCG-----CGC-----UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.