miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13183 5' -60.7 NC_003401.1 + 8720 0.71 0.376529
Target:  5'- gCACCGCCCUCAccguccagacgAcGGCGCGucagccggucGCCGCCa -3'
miRNA:   3'- aGUGGUGGGGGU-----------UcCCGCGC----------UGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 10648 0.74 0.276463
Target:  5'- -gGCCACCCCCucGGaGCcacgGACCACCa -3'
miRNA:   3'- agUGGUGGGGGuuCC-CGcg--CUGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 10818 0.68 0.569369
Target:  5'- cCGCCACgguggugguccguggCUCCGAGGGgGUGGCCGg- -3'
miRNA:   3'- aGUGGUG---------------GGGGUUCCCgCGCUGGUgg -5'
13183 5' -60.7 NC_003401.1 + 10898 0.68 0.594989
Target:  5'- gUCGCgCuuCCCUggGaGGCGCGcuGCCGCUc -3'
miRNA:   3'- -AGUG-GugGGGGuuC-CCGCGC--UGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 11054 0.71 0.426294
Target:  5'- -aGCgCGCCuCCCAGGGaaGCGCGACgaagCGCCg -3'
miRNA:   3'- agUG-GUGG-GGGUUCC--CGCGCUG----GUGG- -5'
13183 5' -60.7 NC_003401.1 + 11585 1.12 0.000628
Target:  5'- gUCACCACCCCCAAGGGCGCGACCACCa -3'
miRNA:   3'- -AGUGGUGGGGGUUCCCGCGCUGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 11845 0.69 0.488067
Target:  5'- -gGCCACCUcggugaccgucuaUCGAGGGUGgaccgaGACCGCCg -3'
miRNA:   3'- agUGGUGGG-------------GGUUCCCGCg-----CUGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 14010 0.68 0.56545
Target:  5'- cUUGCCGCCCgCCAGagccGCGCGGCCAa- -3'
miRNA:   3'- -AGUGGUGGG-GGUUcc--CGCGCUGGUgg -5'
13183 5' -60.7 NC_003401.1 + 14175 0.68 0.594
Target:  5'- cUC-CCGCCCCUGccGGCGCcGgagccguucagccGCCACCa -3'
miRNA:   3'- -AGuGGUGGGGGUucCCGCG-C-------------UGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 14230 0.68 0.582151
Target:  5'- -gACCGCggacgCCCGGGGGCGCuagagggugucgggGACCgGCCg -3'
miRNA:   3'- agUGGUGg----GGGUUCCCGCG--------------CUGG-UGG- -5'
13183 5' -60.7 NC_003401.1 + 16242 0.74 0.264036
Target:  5'- aUCGCaCGCCgCCAGGGuGCGCcgGAUCGCCc -3'
miRNA:   3'- -AGUG-GUGGgGGUUCC-CGCG--CUGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 16854 0.66 0.664491
Target:  5'- -aACCugCCCCAccuGGCG-GugUACCa -3'
miRNA:   3'- agUGGugGGGGUuc-CCGCgCugGUGG- -5'
13183 5' -60.7 NC_003401.1 + 17631 0.71 0.41773
Target:  5'- gUCGCCGCCggaaUCCAacGGGGCGauaagGGCCACg -3'
miRNA:   3'- -AGUGGUGG----GGGU--UCCCGCg----CUGGUGg -5'
13183 5' -60.7 NC_003401.1 + 17815 0.67 0.634703
Target:  5'- -gGgUGCCCuCCGAGcGCGCG-CCGCCg -3'
miRNA:   3'- agUgGUGGG-GGUUCcCGCGCuGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 18206 0.68 0.585109
Target:  5'- gUCGgCguagACCCCCAAua-CGCGGCCGCCg -3'
miRNA:   3'- -AGUgG----UGGGGGUUcccGCGCUGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 18308 0.67 0.653584
Target:  5'- gCGcCCugCCCCGu-GGUGCGAuuaagcuCCGCCg -3'
miRNA:   3'- aGU-GGugGGGGUucCCGCGCU-------GGUGG- -5'
13183 5' -60.7 NC_003401.1 + 19069 0.73 0.302709
Target:  5'- ---aCACCCCgGGcGGGCGC-ACCACCg -3'
miRNA:   3'- agugGUGGGGgUU-CCCGCGcUGGUGG- -5'
13183 5' -60.7 NC_003401.1 + 19808 0.71 0.38374
Target:  5'- gUCACCccGCCCggcagcuCCAGGGcGCGCGAUCggugGCCg -3'
miRNA:   3'- -AGUGG--UGGG-------GGUUCC-CGCGCUGG----UGG- -5'
13183 5' -60.7 NC_003401.1 + 19955 0.7 0.43409
Target:  5'- -aGCCACCUguguguuCgCGAGGcGCGCGACC-CCg -3'
miRNA:   3'- agUGGUGGG-------G-GUUCC-CGCGCUGGuGG- -5'
13183 5' -60.7 NC_003401.1 + 20379 0.69 0.536304
Target:  5'- -aGgCGCCCCCugguccugucaaGAGaGGCGCGGuuGCCg -3'
miRNA:   3'- agUgGUGGGGG------------UUC-CCGCGCUggUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.