miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13185 5' -63 NC_003401.1 + 103127 0.66 0.543736
Target:  5'- --aGCGA-CCGCCguccgAGgCCACCGCCGu -3'
miRNA:   3'- aagCGCUgGGCGG-----UCgGGUGGUGGCu -5'
13185 5' -63 NC_003401.1 + 132563 0.66 0.543736
Target:  5'- -gCGCGGCUCccgauGCCGGgCgGCCGCCGc -3'
miRNA:   3'- aaGCGCUGGG-----CGGUCgGgUGGUGGCu -5'
13185 5' -63 NC_003401.1 + 8740 0.66 0.543736
Target:  5'- -aCGaCGGCgCGUCAGCCgguCGCCGCCa- -3'
miRNA:   3'- aaGC-GCUGgGCGGUCGG---GUGGUGGcu -5'
13185 5' -63 NC_003401.1 + 42206 0.66 0.543736
Target:  5'- gUCGCGuuuaacguCCCcCCGGCCCucAUgGCCGAg -3'
miRNA:   3'- aAGCGCu-------GGGcGGUCGGG--UGgUGGCU- -5'
13185 5' -63 NC_003401.1 + 118835 0.66 0.537956
Target:  5'- --aGCGGCCCcucGCguugcgggggucauaCGGCCCACCGgCGAc -3'
miRNA:   3'- aagCGCUGGG---CG---------------GUCGGGUGGUgGCU- -5'
13185 5' -63 NC_003401.1 + 118351 0.66 0.534114
Target:  5'- --aGCG-CCCG-CGGUgCCGCCGCCGGg -3'
miRNA:   3'- aagCGCuGGGCgGUCG-GGUGGUGGCU- -5'
13185 5' -63 NC_003401.1 + 42305 0.66 0.524553
Target:  5'- aUUUGCGACCagcggguggaGCguGgCCGCCACCa- -3'
miRNA:   3'- -AAGCGCUGGg---------CGguCgGGUGGUGGcu -5'
13185 5' -63 NC_003401.1 + 80572 0.66 0.515058
Target:  5'- --aGCG-CCCaGUCAGCUgGCUACCGGu -3'
miRNA:   3'- aagCGCuGGG-CGGUCGGgUGGUGGCU- -5'
13185 5' -63 NC_003401.1 + 69595 0.67 0.505633
Target:  5'- aUgGCGGCCgGCUcuccGCCCuuCGCCGAa -3'
miRNA:   3'- aAgCGCUGGgCGGu---CGGGugGUGGCU- -5'
13185 5' -63 NC_003401.1 + 14010 0.67 0.505633
Target:  5'- cUUGCcGCCCGCCagAGCCgCGCgGCCa- -3'
miRNA:   3'- aAGCGcUGGGCGG--UCGG-GUGgUGGcu -5'
13185 5' -63 NC_003401.1 + 133534 0.67 0.505633
Target:  5'- -aCGgGACCCGggccucuccCCcGCCCggACCGCCGGg -3'
miRNA:   3'- aaGCgCUGGGC---------GGuCGGG--UGGUGGCU- -5'
13185 5' -63 NC_003401.1 + 81008 0.67 0.496283
Target:  5'- gUCGcCGAauCCCGUCGaugcGCCCAUCGCCa- -3'
miRNA:   3'- aAGC-GCU--GGGCGGU----CGGGUGGUGGcu -5'
13185 5' -63 NC_003401.1 + 122375 0.67 0.487012
Target:  5'- -cCGCGGCCCccuuaccuugucGCCGGCgaACCGCgGAa -3'
miRNA:   3'- aaGCGCUGGG------------CGGUCGggUGGUGgCU- -5'
13185 5' -63 NC_003401.1 + 117932 0.67 0.486089
Target:  5'- -cCGCGGCCCaaaucugggGCCcaugguggcgcgcGGCCC-CCACCGu -3'
miRNA:   3'- aaGCGCUGGG---------CGG-------------UCGGGuGGUGGCu -5'
13185 5' -63 NC_003401.1 + 105633 0.67 0.477824
Target:  5'- ---uUGGCCCGCgCGGUCCAaCGCCGAg -3'
miRNA:   3'- aagcGCUGGGCG-GUCGGGUgGUGGCU- -5'
13185 5' -63 NC_003401.1 + 17033 0.67 0.458813
Target:  5'- cUCGCaccuGCUCGCCAGCUuuugguaCACCGCCa- -3'
miRNA:   3'- aAGCGc---UGGGCGGUCGG-------GUGGUGGcu -5'
13185 5' -63 NC_003401.1 + 132565 0.68 0.450789
Target:  5'- -gCGgGACCC-CCGGcCCCGCgaACCGAa -3'
miRNA:   3'- aaGCgCUGGGcGGUC-GGGUGg-UGGCU- -5'
13185 5' -63 NC_003401.1 + 132656 0.68 0.433241
Target:  5'- -gCGCGGCgCCGCCGGgCUcgGCCggACCGGg -3'
miRNA:   3'- aaGCGCUG-GGCGGUCgGG--UGG--UGGCU- -5'
13185 5' -63 NC_003401.1 + 9325 0.68 0.433241
Target:  5'- -cCGCuuCCUGUCAGCCCcccgaggaacaGCUACCGAc -3'
miRNA:   3'- aaGCGcuGGGCGGUCGGG-----------UGGUGGCU- -5'
13185 5' -63 NC_003401.1 + 32492 0.68 0.424617
Target:  5'- -gCGCGcCaCCGcCCGGCaCCACCGCCc- -3'
miRNA:   3'- aaGCGCuG-GGC-GGUCG-GGUGGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.