miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13187 3' -52.8 NC_003401.1 + 110215 0.66 0.969787
Target:  5'- uCCGgaAAacGUUUAGUUGACGAGcuGUGCg -3'
miRNA:   3'- cGGCgaUU--CGGAUCGACUGCUC--UACG- -5'
13187 3' -52.8 NC_003401.1 + 109513 0.66 0.966631
Target:  5'- gGCCGCUu-GCCUaaccuGGCUGAaGAcGAaGCu -3'
miRNA:   3'- -CGGCGAuuCGGA-----UCGACUgCU-CUaCG- -5'
13187 3' -52.8 NC_003401.1 + 14884 0.66 0.966631
Target:  5'- cGCCacGCcccGCCUGGC-GGCcaGAGAUGCc -3'
miRNA:   3'- -CGG--CGauuCGGAUCGaCUG--CUCUACG- -5'
13187 3' -52.8 NC_003401.1 + 128826 0.66 0.966631
Target:  5'- uUUGCUAAGUCUAGCcGGCGcaaaagcaagcGGGUGg -3'
miRNA:   3'- cGGCGAUUCGGAUCGaCUGC-----------UCUACg -5'
13187 3' -52.8 NC_003401.1 + 32064 0.66 0.964629
Target:  5'- gGCCGaaggaGGGUCUGGCuuUGGCGAcgagcuuguccgucaGAUGCg -3'
miRNA:   3'- -CGGCga---UUCGGAUCG--ACUGCU---------------CUACG- -5'
13187 3' -52.8 NC_003401.1 + 84479 0.66 0.959636
Target:  5'- aGCCGUUGucGCCUAcuGC-GugGAGAgaggucUGCa -3'
miRNA:   3'- -CGGCGAUu-CGGAU--CGaCugCUCU------ACG- -5'
13187 3' -52.8 NC_003401.1 + 132650 0.66 0.959636
Target:  5'- cGCCGCcGGGCUcGGCcgGAcCGGGgcGCu -3'
miRNA:   3'- -CGGCGaUUCGGaUCGa-CU-GCUCuaCG- -5'
13187 3' -52.8 NC_003401.1 + 133486 0.66 0.959636
Target:  5'- gGCUGCc-GGCC-AGCUGcguGCGAGG-GCg -3'
miRNA:   3'- -CGGCGauUCGGaUCGAC---UGCUCUaCG- -5'
13187 3' -52.8 NC_003401.1 + 771 0.66 0.959636
Target:  5'- gGCUGCc-GGCC-AGCUGcguGCGAGG-GCg -3'
miRNA:   3'- -CGGCGauUCGGaUCGAC---UGCUCUaCG- -5'
13187 3' -52.8 NC_003401.1 + 101884 0.66 0.955785
Target:  5'- aCCGCUAaaaAGCCUggacucagguGGUUGGCGAucUGUu -3'
miRNA:   3'- cGGCGAU---UCGGA----------UCGACUGCUcuACG- -5'
13187 3' -52.8 NC_003401.1 + 132241 0.67 0.951691
Target:  5'- aCCGCaGAGCCcuGCUGGCcuaaGGGAacUGCa -3'
miRNA:   3'- cGGCGaUUCGGauCGACUG----CUCU--ACG- -5'
13187 3' -52.8 NC_003401.1 + 77996 0.67 0.951691
Target:  5'- cGCCcCUGuGCCacGGUucucgaUGACGGGGUGCa -3'
miRNA:   3'- -CGGcGAUuCGGa-UCG------ACUGCUCUACG- -5'
13187 3' -52.8 NC_003401.1 + 126124 0.67 0.951691
Target:  5'- aCUGCagGGGCgUuuccuCUGACGGGAUGCg -3'
miRNA:   3'- cGGCGa-UUCGgAuc---GACUGCUCUACG- -5'
13187 3' -52.8 NC_003401.1 + 23528 0.67 0.947352
Target:  5'- cGCCGCagaggAGGCCggugguggcGCUGGCGaAGAUaGUg -3'
miRNA:   3'- -CGGCGa----UUCGGau-------CGACUGC-UCUA-CG- -5'
13187 3' -52.8 NC_003401.1 + 122473 0.67 0.947352
Target:  5'- gGCgGCUGGGCUUGGUgucagUGAUucacacAGAUGCg -3'
miRNA:   3'- -CGgCGAUUCGGAUCG-----ACUGc-----UCUACG- -5'
13187 3' -52.8 NC_003401.1 + 184 0.67 0.942762
Target:  5'- uGCuCGCU-GGCCUGcuuGCUGAgGGGAcaguagggcUGCu -3'
miRNA:   3'- -CG-GCGAuUCGGAU---CGACUgCUCU---------ACG- -5'
13187 3' -52.8 NC_003401.1 + 120 0.67 0.942762
Target:  5'- uGCuCGCU-GGCCUGcuuGCUGAgGGGAcaguaggccUGCu -3'
miRNA:   3'- -CG-GCGAuUCGGAU---CGACUgCUCU---------ACG- -5'
13187 3' -52.8 NC_003401.1 + 80 0.67 0.942762
Target:  5'- uGCuCGCU-GGCCUGcuuGCUGAgGGGAcaguaggccUGCu -3'
miRNA:   3'- -CG-GCGAuUCGGAU---CGACUgCUCU---------ACG- -5'
13187 3' -52.8 NC_003401.1 + 132919 0.67 0.942762
Target:  5'- uGCuCGCU-GGCCUGcuuGCUGAgGGGAcaguagggcUGCu -3'
miRNA:   3'- -CG-GCGAuUCGGAU---CGACUgCUCU---------ACG- -5'
13187 3' -52.8 NC_003401.1 + 133115 0.67 0.942762
Target:  5'- uGCuCGCU-GGCCUGcuuGCUGAgGGGAcaguagggcUGCu -3'
miRNA:   3'- -CG-GCGAuUCGGAU---CGACUgCUCU---------ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.