miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13188 5' -53.7 NC_003401.1 + 109646 0.66 0.954725
Target:  5'- gGCcucGGUgCGUUgagGCGaACGGGCUCCGUg -3'
miRNA:   3'- aCG---UCAaGCGGa--UGC-UGUUCGAGGCG- -5'
13188 5' -53.7 NC_003401.1 + 69284 0.66 0.9506
Target:  5'- -cCGGUUCGacauCUGCGGCcccuGGC-CCGCa -3'
miRNA:   3'- acGUCAAGCg---GAUGCUGu---UCGaGGCG- -5'
13188 5' -53.7 NC_003401.1 + 108627 0.66 0.9506
Target:  5'- aGCAGggC-CCUaaACGuCAGGCUCCu- -3'
miRNA:   3'- aCGUCaaGcGGA--UGCuGUUCGAGGcg -5'
13188 5' -53.7 NC_003401.1 + 18301 0.66 0.946233
Target:  5'- cGCcGccgCGCCcugccccguggUGCGAuUAAGCUCCGCc -3'
miRNA:   3'- aCGuCaa-GCGG-----------AUGCU-GUUCGAGGCG- -5'
13188 5' -53.7 NC_003401.1 + 109318 0.66 0.94533
Target:  5'- gGCAGgauaagaaccgCGCCcAUGACAggcAGCUUCGUc -3'
miRNA:   3'- aCGUCaa---------GCGGaUGCUGU---UCGAGGCG- -5'
13188 5' -53.7 NC_003401.1 + 66687 0.67 0.931641
Target:  5'- cUGCAG---GCUUGCuGACAGGC-CCGUa -3'
miRNA:   3'- -ACGUCaagCGGAUG-CUGUUCGaGGCG- -5'
13188 5' -53.7 NC_003401.1 + 27360 0.67 0.920656
Target:  5'- cGCuGUUUGCCaucagGCGAUAGGUgugcguuuaaCCGCg -3'
miRNA:   3'- aCGuCAAGCGGa----UGCUGUUCGa---------GGCG- -5'
13188 5' -53.7 NC_003401.1 + 125889 0.67 0.914785
Target:  5'- aGCAGUggcCGCCUugGuCAcccccGGUgccCCGCu -3'
miRNA:   3'- aCGUCAa--GCGGAugCuGU-----UCGa--GGCG- -5'
13188 5' -53.7 NC_003401.1 + 43333 0.67 0.911143
Target:  5'- cUGCAGguccgucgcgcuggUCGCCggcguuccCGugAGGCgggCCGCg -3'
miRNA:   3'- -ACGUCa-------------AGCGGau------GCugUUCGa--GGCG- -5'
13188 5' -53.7 NC_003401.1 + 26996 0.68 0.89568
Target:  5'- aGCGc-UCGCCUguACGAgAGGCUCUuGCg -3'
miRNA:   3'- aCGUcaAGCGGA--UGCUgUUCGAGG-CG- -5'
13188 5' -53.7 NC_003401.1 + 122262 0.68 0.881727
Target:  5'- cGCAGagCGCCguuaaccGCaGCGAGCaCCGCa -3'
miRNA:   3'- aCGUCaaGCGGa------UGcUGUUCGaGGCG- -5'
13188 5' -53.7 NC_003401.1 + 122428 0.68 0.881727
Target:  5'- gUGCGGUgcUCGCUgcgguuaACGGC--GCUCUGCg -3'
miRNA:   3'- -ACGUCA--AGCGGa------UGCUGuuCGAGGCG- -5'
13188 5' -53.7 NC_003401.1 + 28999 0.68 0.874397
Target:  5'- aGCAGggUCGCC-ACGAUugaGGGCUCUa- -3'
miRNA:   3'- aCGUCa-AGCGGaUGCUG---UUCGAGGcg -5'
13188 5' -53.7 NC_003401.1 + 19597 0.69 0.862196
Target:  5'- cGCGGUUCGguggcccggcgaaaCUGCGGCA-GCUCCu- -3'
miRNA:   3'- aCGUCAAGCg-------------GAUGCUGUuCGAGGcg -5'
13188 5' -53.7 NC_003401.1 + 88244 0.69 0.859057
Target:  5'- uUGCAGUggUCGCUUugGcgccggcaACAGGCgaacgCCGUu -3'
miRNA:   3'- -ACGUCA--AGCGGAugC--------UGUUCGa----GGCG- -5'
13188 5' -53.7 NC_003401.1 + 18825 0.69 0.851059
Target:  5'- cGCGGaUCGCgagcuggugCUGCGGguuCAcGCUCCGCa -3'
miRNA:   3'- aCGUCaAGCG---------GAUGCU---GUuCGAGGCG- -5'
13188 5' -53.7 NC_003401.1 + 132075 0.69 0.834444
Target:  5'- uUGCAGUUC-CCUuaGGCcagcaGGGCUCUGCg -3'
miRNA:   3'- -ACGUCAAGcGGAugCUG-----UUCGAGGCG- -5'
13188 5' -53.7 NC_003401.1 + 21602 0.69 0.825841
Target:  5'- cUGCAGcUCGCCguggucgccGCGGCAcgcgcAGCggacggCCGCg -3'
miRNA:   3'- -ACGUCaAGCGGa--------UGCUGU-----UCGa-----GGCG- -5'
13188 5' -53.7 NC_003401.1 + 119237 0.71 0.7311
Target:  5'- --uGGUUgCGCCUGCGAcCAAGCUggUCGCc -3'
miRNA:   3'- acgUCAA-GCGGAUGCU-GUUCGA--GGCG- -5'
13188 5' -53.7 NC_003401.1 + 92413 0.72 0.663007
Target:  5'- cGCAGUuuguuaggacgaccaUCGCCUACGgggacaaucacACGAGCaCCGUg -3'
miRNA:   3'- aCGUCA---------------AGCGGAUGC-----------UGUUCGaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.