Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13188 | 5' | -53.7 | NC_003401.1 | + | 12838 | 1.13 | 0.002243 |
Target: 5'- cUGCAGUUCGCCUACGACAAGCUCCGCg -3' miRNA: 3'- -ACGUCAAGCGGAUGCUGUUCGAGGCG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 122542 | 0.82 | 0.226605 |
Target: 5'- cGCGGUUCGCCgGCGACAAGgUaagggggCCGCg -3' miRNA: 3'- aCGUCAAGCGGaUGCUGUUCgA-------GGCG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 20265 | 0.74 | 0.564608 |
Target: 5'- cGCGGa-CGCC-GCGGCcauuGGCUCCGCg -3' miRNA: 3'- aCGUCaaGCGGaUGCUGu---UCGAGGCG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 11057 | 0.74 | 0.585386 |
Target: 5'- gGCAGcgCGCCUcccagggaagcGCGACgAAGCgCCGCc -3' miRNA: 3'- aCGUCaaGCGGA-----------UGCUG-UUCGaGGCG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 8618 | 0.73 | 0.6168 |
Target: 5'- gGCuGUUgGUCUuuacguACGACAccAGCUCCGCc -3' miRNA: 3'- aCGuCAAgCGGA------UGCUGU--UCGAGGCG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 10834 | 0.73 | 0.6168 |
Target: 5'- gGgGGgcgUCGCCUACGGCGAGgCgUCCGa -3' miRNA: 3'- aCgUCa--AGCGGAUGCUGUUC-G-AGGCg -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 118371 | 0.73 | 0.648324 |
Target: 5'- gUGCGGcUCgGCCUGCGGCGAcGCUgaCGCc -3' miRNA: 3'- -ACGUCaAG-CGGAUGCUGUU-CGAg-GCG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 92413 | 0.72 | 0.663007 |
Target: 5'- cGCAGUuuguuaggacgaccaUCGCCUACGgggacaaucacACGAGCaCCGUg -3' miRNA: 3'- aCGUCA---------------AGCGGAUGC-----------UGUUCGaGGCG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 119237 | 0.71 | 0.7311 |
Target: 5'- --uGGUUgCGCCUGCGAcCAAGCUggUCGCc -3' miRNA: 3'- acgUCAA-GCGGAUGCU-GUUCGA--GGCG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 21602 | 0.69 | 0.825841 |
Target: 5'- cUGCAGcUCGCCguggucgccGCGGCAcgcgcAGCggacggCCGCg -3' miRNA: 3'- -ACGUCaAGCGGa--------UGCUGU-----UCGa-----GGCG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 132075 | 0.69 | 0.834444 |
Target: 5'- uUGCAGUUC-CCUuaGGCcagcaGGGCUCUGCg -3' miRNA: 3'- -ACGUCAAGcGGAugCUG-----UUCGAGGCG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 18825 | 0.69 | 0.851059 |
Target: 5'- cGCGGaUCGCgagcuggugCUGCGGguuCAcGCUCCGCa -3' miRNA: 3'- aCGUCaAGCG---------GAUGCU---GUuCGAGGCG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 88244 | 0.69 | 0.859057 |
Target: 5'- uUGCAGUggUCGCUUugGcgccggcaACAGGCgaacgCCGUu -3' miRNA: 3'- -ACGUCA--AGCGGAugC--------UGUUCGa----GGCG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 19597 | 0.69 | 0.862196 |
Target: 5'- cGCGGUUCGguggcccggcgaaaCUGCGGCA-GCUCCu- -3' miRNA: 3'- aCGUCAAGCg-------------GAUGCUGUuCGAGGcg -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 28999 | 0.68 | 0.874397 |
Target: 5'- aGCAGggUCGCC-ACGAUugaGGGCUCUa- -3' miRNA: 3'- aCGUCa-AGCGGaUGCUG---UUCGAGGcg -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 122428 | 0.68 | 0.881727 |
Target: 5'- gUGCGGUgcUCGCUgcgguuaACGGC--GCUCUGCg -3' miRNA: 3'- -ACGUCA--AGCGGa------UGCUGuuCGAGGCG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 122262 | 0.68 | 0.881727 |
Target: 5'- cGCAGagCGCCguuaaccGCaGCGAGCaCCGCa -3' miRNA: 3'- aCGUCaaGCGGa------UGcUGUUCGaGGCG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 26996 | 0.68 | 0.89568 |
Target: 5'- aGCGc-UCGCCUguACGAgAGGCUCUuGCg -3' miRNA: 3'- aCGUcaAGCGGA--UGCUgUUCGAGG-CG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 43333 | 0.67 | 0.911143 |
Target: 5'- cUGCAGguccgucgcgcuggUCGCCggcguuccCGugAGGCgggCCGCg -3' miRNA: 3'- -ACGUCa-------------AGCGGau------GCugUUCGa--GGCG- -5' |
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13188 | 5' | -53.7 | NC_003401.1 | + | 125889 | 0.67 | 0.914785 |
Target: 5'- aGCAGUggcCGCCUugGuCAcccccGGUgccCCGCu -3' miRNA: 3'- aCGUCAa--GCGGAugCuGU-----UCGa--GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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