miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13189 3' -61.6 NC_003401.1 + 12500 0.66 0.649422
Target:  5'- -aGACccGCGUuucGGUGGUGGGCU-GGCGg -3'
miRNA:   3'- gcCUGa-CGCA---CCGCCACCUGGuCCGC- -5'
13189 3' -61.6 NC_003401.1 + 72067 0.66 0.649422
Target:  5'- aCGGACUGCucgGUaucGCGuGUGGACCGcGCa -3'
miRNA:   3'- -GCCUGACG---CAc--CGC-CACCUGGUcCGc -5'
13189 3' -61.6 NC_003401.1 + 103313 0.67 0.594112
Target:  5'- uGGGCgucgGCGUguaguccaugggaacGGCGGUGG-CCucggacGGCGg -3'
miRNA:   3'- gCCUGa---CGCA---------------CCGCCACCuGGu-----CCGC- -5'
13189 3' -61.6 NC_003401.1 + 21358 0.67 0.580366
Target:  5'- uGGaccaGCUGCGUuacGUGGUGGAUcuaauuaaCAGGCGg -3'
miRNA:   3'- gCC----UGACGCAc--CGCCACCUG--------GUCCGC- -5'
13189 3' -61.6 NC_003401.1 + 32317 0.67 0.570588
Target:  5'- aGGuGCccGCcuaaaagGGCGGUGGuGCCGGGCGg -3'
miRNA:   3'- gCC-UGa-CGca-----CCGCCACC-UGGUCCGC- -5'
13189 3' -61.6 NC_003401.1 + 84347 0.68 0.54056
Target:  5'- gCGGAC-GCacgGUGGCGGcUGGACCgccuuccGGGUa -3'
miRNA:   3'- -GCCUGaCG---CACCGCC-ACCUGG-------UCCGc -5'
13189 3' -61.6 NC_003401.1 + 132770 0.68 0.531938
Target:  5'- gGGGCgGCGUGGgGGagggGaGGCC-GGCGg -3'
miRNA:   3'- gCCUGaCGCACCgCCa---C-CUGGuCCGC- -5'
13189 3' -61.6 NC_003401.1 + 126939 0.68 0.494273
Target:  5'- uCGGACagUGCGUGGCuuaUGGAgaaCAGGCa -3'
miRNA:   3'- -GCCUG--ACGCACCGcc-ACCUg--GUCCGc -5'
13189 3' -61.6 NC_003401.1 + 27682 0.69 0.457871
Target:  5'- cCGG-CUGCGUGGCgagaccggcguGGUGGcucGCCGGcuGCGg -3'
miRNA:   3'- -GCCuGACGCACCG-----------CCACC---UGGUC--CGC- -5'
13189 3' -61.6 NC_003401.1 + 121488 0.69 0.457871
Target:  5'- aGGACgucgGCGuUGGCGauuGUGGcgguCCAGGUGa -3'
miRNA:   3'- gCCUGa---CGC-ACCGC---CACCu---GGUCCGC- -5'
13189 3' -61.6 NC_003401.1 + 35640 0.69 0.440215
Target:  5'- uCGGAaUGUGUagGGCGGU--ACCGGGCGg -3'
miRNA:   3'- -GCCUgACGCA--CCGCCAccUGGUCCGC- -5'
13189 3' -61.6 NC_003401.1 + 132490 0.73 0.287449
Target:  5'- cCGGGCcgGCGgGGCGGaGGGCCGGGa- -3'
miRNA:   3'- -GCCUGa-CGCaCCGCCaCCUGGUCCgc -5'
13189 3' -61.6 NC_003401.1 + 13032 1.08 0.000965
Target:  5'- aCGGACUGCGUGGCGGUGGACCAGGCGu -3'
miRNA:   3'- -GCCUGACGCACCGCCACCUGGUCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.