miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13189 5' -56.5 NC_003401.1 + 12558 0.66 0.883016
Target:  5'- aCCGCcgacuuGGGGuCCUCCGC-CuUCCACg -3'
miRNA:   3'- aGGUGu-----UCUC-GGAGGCGuGcAGGUGg -5'
13189 5' -56.5 NC_003401.1 + 127823 0.66 0.883016
Target:  5'- aCCugGGGAGCg-CCGCAgGUaUUACCc -3'
miRNA:   3'- aGGugUUCUCGgaGGCGUgCA-GGUGG- -5'
13189 5' -56.5 NC_003401.1 + 63060 0.66 0.883016
Target:  5'- aCCGCuAGAGUC-CUGCACGaCCAg- -3'
miRNA:   3'- aGGUGuUCUCGGaGGCGUGCaGGUgg -5'
13189 5' -56.5 NC_003401.1 + 10375 0.66 0.87592
Target:  5'- -aCACGAG-GCCgauaUGCACGagCACCg -3'
miRNA:   3'- agGUGUUCuCGGag--GCGUGCagGUGG- -5'
13189 5' -56.5 NC_003401.1 + 23000 0.66 0.87592
Target:  5'- uUUCGCGGGgcccuuugGGCC-CCGCGCGUCUg-- -3'
miRNA:   3'- -AGGUGUUC--------UCGGaGGCGUGCAGGugg -5'
13189 5' -56.5 NC_003401.1 + 71074 0.66 0.87592
Target:  5'- uUCCugAGGucuugcacuGCCgcgcgcguUuuGCGCGUCCAUCu -3'
miRNA:   3'- -AGGugUUCu--------CGG--------AggCGUGCAGGUGG- -5'
13189 5' -56.5 NC_003401.1 + 71879 0.66 0.868606
Target:  5'- gUCCuguCuuucAGAGCCaUCCGUGCGcggUCCACa -3'
miRNA:   3'- -AGGu--Gu---UCUCGG-AGGCGUGC---AGGUGg -5'
13189 5' -56.5 NC_003401.1 + 48981 0.66 0.868606
Target:  5'- gUCaCACAGGAGCCagcUCCaGUuuACGUCgGCa -3'
miRNA:   3'- -AG-GUGUUCUCGG---AGG-CG--UGCAGgUGg -5'
13189 5' -56.5 NC_003401.1 + 125001 0.66 0.868606
Target:  5'- gUCCGCAAGcucgGGCggCaCGUACGcCCACUg -3'
miRNA:   3'- -AGGUGUUC----UCGgaG-GCGUGCaGGUGG- -5'
13189 5' -56.5 NC_003401.1 + 9641 0.66 0.861079
Target:  5'- aCgGCGAGGGCCgacagCUGCGCGUauaaUGCUg -3'
miRNA:   3'- aGgUGUUCUCGGa----GGCGUGCAg---GUGG- -5'
13189 5' -56.5 NC_003401.1 + 101471 0.66 0.861079
Target:  5'- gCCugGAGGGCCgCCGCuucuCGgacggCuCGCCc -3'
miRNA:   3'- aGGugUUCUCGGaGGCGu---GCa----G-GUGG- -5'
13189 5' -56.5 NC_003401.1 + 88371 0.66 0.853346
Target:  5'- cCCAC-GGcGCCUUCGUAC-UCCAUCc -3'
miRNA:   3'- aGGUGuUCuCGGAGGCGUGcAGGUGG- -5'
13189 5' -56.5 NC_003401.1 + 23682 0.67 0.845413
Target:  5'- aCCACc--GGCCUCCucugcggcGCGCGU-CACCg -3'
miRNA:   3'- aGGUGuucUCGGAGG--------CGUGCAgGUGG- -5'
13189 5' -56.5 NC_003401.1 + 103121 0.67 0.845413
Target:  5'- gCCAC--GAGCgaCCGC-CGUCCgagGCCa -3'
miRNA:   3'- aGGUGuuCUCGgaGGCGuGCAGG---UGG- -5'
13189 5' -56.5 NC_003401.1 + 64213 0.67 0.837286
Target:  5'- aUCaCugGGGGGCCUCCGUacccggGCGg-UACCg -3'
miRNA:   3'- -AG-GugUUCUCGGAGGCG------UGCagGUGG- -5'
13189 5' -56.5 NC_003401.1 + 115838 0.67 0.828971
Target:  5'- gCCACcccGGAGCCgagCCGCccccaccCGgagCCACCc -3'
miRNA:   3'- aGGUGu--UCUCGGa--GGCGu------GCa--GGUGG- -5'
13189 5' -56.5 NC_003401.1 + 115966 0.67 0.828971
Target:  5'- gCCACcccGGAGCCgagCCGCccccaccCGgagCCACCc -3'
miRNA:   3'- aGGUGu--UCUCGGa--GGCGu------GCa--GGUGG- -5'
13189 5' -56.5 NC_003401.1 + 116414 0.67 0.828971
Target:  5'- gCCACcccGGAGCCgagCCGCccccaccCGgagCCACCc -3'
miRNA:   3'- aGGUGu--UCUCGGa--GGCGu------GCa--GGUGG- -5'
13189 5' -56.5 NC_003401.1 + 55950 0.67 0.828971
Target:  5'- aCUACAcugugGGAGCCUaugaGCACGaUCCAUg -3'
miRNA:   3'- aGGUGU-----UCUCGGAgg--CGUGC-AGGUGg -5'
13189 5' -56.5 NC_003401.1 + 116030 0.67 0.828971
Target:  5'- gCCACcccGGAGCCgagCCGCccccaccCGgagCCACCc -3'
miRNA:   3'- aGGUGu--UCUCGGa--GGCGu------GCa--GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.