miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13190 3' -62.3 NC_003401.1 + 14763 0.67 0.569672
Target:  5'- cGACCcucaGCGACCGCCUcG-UCGCGugCg -3'
miRNA:   3'- cUUGG----CGCUGGCGGAcCgGGCGCugG- -5'
13190 3' -62.3 NC_003401.1 + 90901 0.67 0.569672
Target:  5'- cGGCCGCGGguaCGCUgucuguUGGCCUGaCGACg -3'
miRNA:   3'- cUUGGCGCUg--GCGG------ACCGGGC-GCUGg -5'
13190 3' -62.3 NC_003401.1 + 9157 0.67 0.569672
Target:  5'- cGAACgUGCuGAUUGUCUGuCCCGCGGCUc -3'
miRNA:   3'- -CUUG-GCG-CUGGCGGACcGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 63939 0.67 0.560005
Target:  5'- cGGGCCuCGcCCGCCUGGUCagGUGAUa -3'
miRNA:   3'- -CUUGGcGCuGGCGGACCGGg-CGCUGg -5'
13190 3' -62.3 NC_003401.1 + 66706 0.67 0.560005
Target:  5'- --cCCGUaGCUGCCUGGCggcgcUCGCGcACCu -3'
miRNA:   3'- cuuGGCGcUGGCGGACCG-----GGCGC-UGG- -5'
13190 3' -62.3 NC_003401.1 + 41527 0.67 0.550383
Target:  5'- cGGGCCuGCGccccACCaCCucgUGGCCCGCGAUUu -3'
miRNA:   3'- -CUUGG-CGC----UGGcGG---ACCGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 117778 0.67 0.550383
Target:  5'- -cGCCGCGACC-CCgccGCCCucauGCGcACCa -3'
miRNA:   3'- cuUGGCGCUGGcGGac-CGGG----CGC-UGG- -5'
13190 3' -62.3 NC_003401.1 + 42174 0.67 0.540813
Target:  5'- ---aCGUGACgCGCCUgccGGCCCaGCGcguGCCg -3'
miRNA:   3'- cuugGCGCUG-GCGGA---CCGGG-CGC---UGG- -5'
13190 3' -62.3 NC_003401.1 + 59 0.67 0.540813
Target:  5'- -cACCGgguaCGGCUGCCUGccuGCUCGCuGGCCu -3'
miRNA:   3'- cuUGGC----GCUGGCGGAC---CGGGCG-CUGG- -5'
13190 3' -62.3 NC_003401.1 + 132794 0.67 0.540813
Target:  5'- -cACCGgguaCGGCUGCCUGccuGCUCGCuGGCCu -3'
miRNA:   3'- cuUGGC----GCUGGCGGAC---CGGGCG-CUGG- -5'
13190 3' -62.3 NC_003401.1 + 20714 0.67 0.540813
Target:  5'- uGGACCuggcguugacCGGCCGCC--GCCCGCGAUUg -3'
miRNA:   3'- -CUUGGc---------GCUGGCGGacCGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 15915 0.67 0.540813
Target:  5'- gGAACCGgGAggauaaaguuCUcCCUGG-CCGCGGCCu -3'
miRNA:   3'- -CUUGGCgCU----------GGcGGACCgGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 81980 0.67 0.535098
Target:  5'- cGGGCCGUGGagucgauaucaggGCCUGGCUCGUuGCCg -3'
miRNA:   3'- -CUUGGCGCUgg-----------CGGACCGGGCGcUGG- -5'
13190 3' -62.3 NC_003401.1 + 132547 0.68 0.521847
Target:  5'- cGAACCGaaaGCgGCCcGGCgCGCGGCg -3'
miRNA:   3'- -CUUGGCgc-UGgCGGaCCGgGCGCUGg -5'
13190 3' -62.3 NC_003401.1 + 47841 0.68 0.520905
Target:  5'- cGGGCCGCGGggacgguCCGUCcGGgCCGUGGuCCg -3'
miRNA:   3'- -CUUGGCGCU-------GGCGGaCCgGGCGCU-GG- -5'
13190 3' -62.3 NC_003401.1 + 28851 0.68 0.520905
Target:  5'- cGAGCCGUGA-CGCCagGGCCaagaaauCGUGGCUc -3'
miRNA:   3'- -CUUGGCGCUgGCGGa-CCGG-------GCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132367 0.68 0.512461
Target:  5'- -cGCCGCccccGGCCGCCccGCgCCGCGcGCCg -3'
miRNA:   3'- cuUGGCG----CUGGCGGacCG-GGCGC-UGG- -5'
13190 3' -62.3 NC_003401.1 + 43225 0.68 0.503145
Target:  5'- aAACUgGCGACaCGgacuguacaucCCUGGCaCUGCGACCu -3'
miRNA:   3'- cUUGG-CGCUG-GC-----------GGACCG-GGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 49882 0.68 0.503145
Target:  5'- -cGCCGCG--CGCCUGGCCC-CGcACg -3'
miRNA:   3'- cuUGGCGCugGCGGACCGGGcGC-UGg -5'
13190 3' -62.3 NC_003401.1 + 88419 0.68 0.503145
Target:  5'- cAACgGCGuuCGCCUGuugccggcGCCaaaGCGACCa -3'
miRNA:   3'- cUUGgCGCugGCGGAC--------CGGg--CGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.