miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13190 5' -57.2 NC_003401.1 + 16043 0.66 0.862472
Target:  5'- -aGGUUGUGcGCCUGGaUGAUGcUCGGg -3'
miRNA:   3'- uaUCAGCGCcUGGACCcGCUAC-AGCC- -5'
13190 5' -57.2 NC_003401.1 + 23270 0.66 0.861715
Target:  5'- ---uUCGCGGGCCgGGGuCGGUacggcuaacccgcGUUGGg -3'
miRNA:   3'- uaucAGCGCCUGGaCCC-GCUA-------------CAGCC- -5'
13190 5' -57.2 NC_003401.1 + 132501 0.66 0.838906
Target:  5'- -cGGcCGCGGGCCcGGGcCGgcGgggCGGa -3'
miRNA:   3'- uaUCaGCGCCUGGaCCC-GCuaCa--GCC- -5'
13190 5' -57.2 NC_003401.1 + 14228 0.66 0.821403
Target:  5'- ----cCGCGGACgCccggGGGCGcuagaggGUGUCGGg -3'
miRNA:   3'- uaucaGCGCCUG-Ga---CCCGC-------UACAGCC- -5'
13190 5' -57.2 NC_003401.1 + 69448 0.67 0.804917
Target:  5'- ----aUGCGGGCCagGGGCcgcaGAUGUCGa -3'
miRNA:   3'- uaucaGCGCCUGGa-CCCG----CUACAGCc -5'
13190 5' -57.2 NC_003401.1 + 122467 0.67 0.77777
Target:  5'- ---uUCGCGGGCggCUGGGCuuGGUGUCa- -3'
miRNA:   3'- uaucAGCGCCUG--GACCCG--CUACAGcc -5'
13190 5' -57.2 NC_003401.1 + 100913 0.67 0.77777
Target:  5'- uUGGUUGcCGGGUCUGGGUagcuUGUCGGu -3'
miRNA:   3'- uAUCAGC-GCCUGGACCCGcu--ACAGCC- -5'
13190 5' -57.2 NC_003401.1 + 120794 0.69 0.670143
Target:  5'- -aAGUgGgGGGCggaUGGGUGAUGUCGu -3'
miRNA:   3'- uaUCAgCgCCUGg--ACCCGCUACAGCc -5'
13190 5' -57.2 NC_003401.1 + 13667 0.7 0.598946
Target:  5'- -aGGUCGCGGGCCa-GGCGGUcgCGGu -3'
miRNA:   3'- uaUCAGCGCCUGGacCCGCUAcaGCC- -5'
13190 5' -57.2 NC_003401.1 + 13880 0.71 0.568644
Target:  5'- ----aUGgGGGCCUGGGCGAUggcGUUGGu -3'
miRNA:   3'- uaucaGCgCCUGGACCCGCUA---CAGCC- -5'
13190 5' -57.2 NC_003401.1 + 6867 0.76 0.313843
Target:  5'- -gAGUCucaGGGCCUGGGCGAUGcUGGu -3'
miRNA:   3'- uaUCAGcg-CCUGGACCCGCUACaGCC- -5'
13190 5' -57.2 NC_003401.1 + 13541 1.08 0.002574
Target:  5'- gAUAGUCGCGGACCUGGGCGAUGUCGGc -3'
miRNA:   3'- -UAUCAGCGCCUGGACCCGCUACAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.