miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13191 3' -56.1 NC_003401.1 + 133485 0.67 0.838027
Target:  5'- -gGGCUGCCgGCCAGcuGCGUgcgaGGGCg -3'
miRNA:   3'- agUCGGCGG-UGGUC--UGCAaacgUCCG- -5'
13191 3' -56.1 NC_003401.1 + 770 0.67 0.838027
Target:  5'- -gGGCUGCCgGCCAGcuGCGUgcgaGGGCg -3'
miRNA:   3'- agUCGGCGG-UGGUC--UGCAaacgUCCG- -5'
13191 3' -56.1 NC_003401.1 + 84481 0.67 0.838027
Target:  5'- cCAGCCGUuguCGCCuacugcguggagAGAgGUcUGCAGGUu -3'
miRNA:   3'- aGUCGGCG---GUGG------------UCUgCAaACGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 103923 0.67 0.81581
Target:  5'- gCGGCCGaacggcuccgccaauCCACCcguGACGagaucGCAGGCa -3'
miRNA:   3'- aGUCGGC---------------GGUGGu--CUGCaaa--CGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 106886 0.67 0.812286
Target:  5'- -gAGgCuaCGCCGG-CGUUUGCGGGUu -3'
miRNA:   3'- agUCgGcgGUGGUCuGCAAACGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 132375 0.67 0.812286
Target:  5'- cCGGCCGCCccgcgccgcgcGCCGGGCcgcuuucgGUUcGCGGGg -3'
miRNA:   3'- aGUCGGCGG-----------UGGUCUG--------CAAaCGUCCg -5'
13191 3' -56.1 NC_003401.1 + 68100 0.67 0.812286
Target:  5'- -gGGuuGCCGCUugguAGAgCGgaUUGCGGGCa -3'
miRNA:   3'- agUCggCGGUGG----UCU-GCa-AACGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 74896 0.67 0.803359
Target:  5'- -uGGCCG-CGCCugguucguuuuGGACGUgUUGCGGGUu -3'
miRNA:   3'- agUCGGCgGUGG-----------UCUGCA-AACGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 42282 0.67 0.802458
Target:  5'- -uGGCCGCCACCAGGgGaucgcUGUAcagcuuggugaacGGCa -3'
miRNA:   3'- agUCGGCGGUGGUCUgCaa---ACGU-------------CCG- -5'
13191 3' -56.1 NC_003401.1 + 6005 0.68 0.794273
Target:  5'- --cGCaCGCCACguGACGUUa--AGGCg -3'
miRNA:   3'- aguCG-GCGGUGguCUGCAAacgUCCG- -5'
13191 3' -56.1 NC_003401.1 + 35394 0.68 0.794273
Target:  5'- aCAGCCGCCaaaaACCAGACGcuccUUGU--GCc -3'
miRNA:   3'- aGUCGGCGG----UGGUCUGCa---AACGucCG- -5'
13191 3' -56.1 NC_003401.1 + 125248 0.68 0.791518
Target:  5'- cUCGGCCGUggccgccaucacguCACCGGACGg--GCGccaccuGGCc -3'
miRNA:   3'- -AGUCGGCG--------------GUGGUCUGCaaaCGU------CCG- -5'
13191 3' -56.1 NC_003401.1 + 119722 0.68 0.780367
Target:  5'- uUCGGUCGCCACCuagaggcAGACGacagagaggccgUGCuguGGCu -3'
miRNA:   3'- -AGUCGGCGGUGG-------UCUGCaa----------ACGu--CCG- -5'
13191 3' -56.1 NC_003401.1 + 68526 0.68 0.753613
Target:  5'- -gGGCCGCCACCuGuaACGUcccgUGCgcagaaugcgcccaGGGCa -3'
miRNA:   3'- agUCGGCGGUGGuC--UGCAa---ACG--------------UCCG- -5'
13191 3' -56.1 NC_003401.1 + 23635 0.68 0.746782
Target:  5'- aCGGgCGCCGCgAG-CGgccgGCAGGUg -3'
miRNA:   3'- aGUCgGCGGUGgUCuGCaaa-CGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 132233 0.69 0.736936
Target:  5'- --cGCCGCCGCCGGGCc---GC-GGCc -3'
miRNA:   3'- aguCGGCGGUGGUCUGcaaaCGuCCG- -5'
13191 3' -56.1 NC_003401.1 + 132582 0.69 0.716974
Target:  5'- gCGGCCGCCGCCcggcauGGCGguccuccGCcGGCc -3'
miRNA:   3'- aGUCGGCGGUGGu-----CUGCaaa----CGuCCG- -5'
13191 3' -56.1 NC_003401.1 + 66740 0.69 0.71496
Target:  5'- aCAGCCGCaCGCCAGuuccagaGCgAGGCa -3'
miRNA:   3'- aGUCGGCG-GUGGUCugcaaa-CG-UCCG- -5'
13191 3' -56.1 NC_003401.1 + 59907 0.69 0.706877
Target:  5'- gCAGuuGCUucagaguuuACCAGAgGgagGCAGGCc -3'
miRNA:   3'- aGUCggCGG---------UGGUCUgCaaaCGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 128216 0.69 0.706877
Target:  5'- aCAG-CGCCAuUCAGACaggUGCAGGUg -3'
miRNA:   3'- aGUCgGCGGU-GGUCUGcaaACGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.