miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13191 5' -62.4 NC_003401.1 + 14238 1.09 0.000665
Target:  5'- cCUGCCUCCGAACGCCAGGGGCAGGCGg -3'
miRNA:   3'- -GACGGAGGCUUGCGGUCCCCGUCCGC- -5'
13191 5' -62.4 NC_003401.1 + 53022 0.75 0.166316
Target:  5'- uCUGCUgUCGuGCGCCGGGGGCccgcAGGCGc -3'
miRNA:   3'- -GACGGaGGCuUGCGGUCCCCG----UCCGC- -5'
13191 5' -62.4 NC_003401.1 + 74933 0.74 0.217089
Target:  5'- uCUGCCUgcCCGccaAGCGcCCAGGcGGCGGGCc -3'
miRNA:   3'- -GACGGA--GGC---UUGC-GGUCC-CCGUCCGc -5'
13191 5' -62.4 NC_003401.1 + 14395 0.7 0.33541
Target:  5'- cCUGCC-CCuGGCGUUcGGaGGCAGGCGg -3'
miRNA:   3'- -GACGGaGGcUUGCGGuCC-CCGUCCGC- -5'
13191 5' -62.4 NC_003401.1 + 117904 0.7 0.365639
Target:  5'- -cGCCgaaCCGGGCG-CGGGGGUucGGCGg -3'
miRNA:   3'- gaCGGa--GGCUUGCgGUCCCCGu-CCGC- -5'
13191 5' -62.4 NC_003401.1 + 14334 0.69 0.397696
Target:  5'- -cGgCUCCG-GCGCCggcAGGGGCGGGa- -3'
miRNA:   3'- gaCgGAGGCuUGCGG---UCCCCGUCCgc -5'
13191 5' -62.4 NC_003401.1 + 132646 0.69 0.405987
Target:  5'- -gGUCUCCGcgcCGCCGGGaGGgGGGCc -3'
miRNA:   3'- gaCGGAGGCuu-GCGGUCC-CCgUCCGc -5'
13191 5' -62.4 NC_003401.1 + 75095 0.69 0.405987
Target:  5'- -cGCCgcCUGGGCGCuUGGcGGGCAGGCa -3'
miRNA:   3'- gaCGGa-GGCUUGCG-GUC-CCCGUCCGc -5'
13191 5' -62.4 NC_003401.1 + 17877 0.69 0.414387
Target:  5'- -cGCCUcgCCGGagACGCgCAGGGGUccaccGGGCa -3'
miRNA:   3'- gaCGGA--GGCU--UGCG-GUCCCCG-----UCCGc -5'
13191 5' -62.4 NC_003401.1 + 42344 0.69 0.422892
Target:  5'- -cGCgaCCGGcacGCGCUGGGccGGCAGGCGc -3'
miRNA:   3'- gaCGgaGGCU---UGCGGUCC--CCGUCCGC- -5'
13191 5' -62.4 NC_003401.1 + 92639 0.68 0.440213
Target:  5'- gUGCuCUCC-AGCGUgGGGGacGCGGGCGu -3'
miRNA:   3'- gACG-GAGGcUUGCGgUCCC--CGUCCGC- -5'
13191 5' -62.4 NC_003401.1 + 118677 0.68 0.457929
Target:  5'- aUGaCCcCCGcAACGCgAGGGGCcgcuGGCGc -3'
miRNA:   3'- gAC-GGaGGC-UUGCGgUCCCCGu---CCGC- -5'
13191 5' -62.4 NC_003401.1 + 119224 0.68 0.46693
Target:  5'- -cGCCggugCCGGcCGCCaagAGGGGCuGGUa -3'
miRNA:   3'- gaCGGa---GGCUuGCGG---UCCCCGuCCGc -5'
13191 5' -62.4 NC_003401.1 + 132367 0.67 0.513218
Target:  5'- -cGCCggCCGGGCGCCuccGGGCccggccgcuAGGCa -3'
miRNA:   3'- gaCGGa-GGCUUGCGGuc-CCCG---------UCCGc -5'
13191 5' -62.4 NC_003401.1 + 132681 0.67 0.522706
Target:  5'- -gGCC-CCGGGCcCgGGGGGCgucgGGGCGc -3'
miRNA:   3'- gaCGGaGGCUUGcGgUCCCCG----UCCGC- -5'
13191 5' -62.4 NC_003401.1 + 23604 0.67 0.522706
Target:  5'- gUGcCCUCCGAACGacCCGGcGcGGCGGGg- -3'
miRNA:   3'- gAC-GGAGGCUUGC--GGUC-C-CCGUCCgc -5'
13191 5' -62.4 NC_003401.1 + 104381 0.67 0.541879
Target:  5'- cCUGCUUC---GCGCCacgAGGacGGCAGGCGa -3'
miRNA:   3'- -GACGGAGgcuUGCGG---UCC--CCGUCCGC- -5'
13191 5' -62.4 NC_003401.1 + 106903 0.66 0.549614
Target:  5'- uUGCCUCUGGuuggcgagaggcuACGCCGGcguuugcGGGUuuGGCGg -3'
miRNA:   3'- gACGGAGGCU-------------UGCGGUC-------CCCGu-CCGC- -5'
13191 5' -62.4 NC_003401.1 + 98993 0.66 0.551553
Target:  5'- -gGCCagCGAGCGUCugauAGGGGCuAGGUc -3'
miRNA:   3'- gaCGGagGCUUGCGG----UCCCCG-UCCGc -5'
13191 5' -62.4 NC_003401.1 + 42753 0.66 0.551553
Target:  5'- -cGCCcaugUCCGAGguaauCGCCGcaacGuGGGCGGGCGu -3'
miRNA:   3'- gaCGG----AGGCUU-----GCGGU----C-CCCGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.