miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13193 5' -54.9 NC_003401.1 + 132197 0.66 0.927575
Target:  5'- --gUUGCcuaGCGGCCGGGcccGGAGGCGCcCg -3'
miRNA:   3'- gaaGAUG---UGCUGGUCC---CUUCCGCGcG- -5'
13193 5' -54.9 NC_003401.1 + 74870 0.66 0.927038
Target:  5'- uCUUCUGCgugcuccACGAUCGGGGcga-CGCGCc -3'
miRNA:   3'- -GAAGAUG-------UGCUGGUCCCuuccGCGCG- -5'
13193 5' -54.9 NC_003401.1 + 122538 0.66 0.916375
Target:  5'- gUUCgccgGCGACaagguaAGGGGGccgcGGCGCGCg -3'
miRNA:   3'- gAAGaug-UGCUGg-----UCCCUU----CCGCGCG- -5'
13193 5' -54.9 NC_003401.1 + 18737 0.66 0.916375
Target:  5'- -cUCUGgGCGAUCGGGGAAcaCGCa- -3'
miRNA:   3'- gaAGAUgUGCUGGUCCCUUccGCGcg -5'
13193 5' -54.9 NC_003401.1 + 92672 0.66 0.916375
Target:  5'- -aUCa--GCGGCCAGGGcAGGGCccccguccuuaGCGUg -3'
miRNA:   3'- gaAGaugUGCUGGUCCC-UUCCG-----------CGCG- -5'
13193 5' -54.9 NC_003401.1 + 121149 0.66 0.915789
Target:  5'- -aUCgcgGCG-GGCgCGGGGGgcgcgggGGGCGCGCc -3'
miRNA:   3'- gaAGa--UGUgCUG-GUCCCU-------UCCGCGCG- -5'
13193 5' -54.9 NC_003401.1 + 74659 0.66 0.910409
Target:  5'- uCUUCgucguuuugACGCGGCUAGGGuacccgcGGgGUGCc -3'
miRNA:   3'- -GAAGa--------UGUGCUGGUCCCuu-----CCgCGCG- -5'
13193 5' -54.9 NC_003401.1 + 63949 0.67 0.904201
Target:  5'- ----aACGCGGUCAGuGGcgcGGGCGCGCu -3'
miRNA:   3'- gaagaUGUGCUGGUC-CCu--UCCGCGCG- -5'
13193 5' -54.9 NC_003401.1 + 15043 0.67 0.891068
Target:  5'- -aUCU-CugGccGCCAGGcGGGgcguGGCGCGCg -3'
miRNA:   3'- gaAGAuGugC--UGGUCC-CUU----CCGCGCG- -5'
13193 5' -54.9 NC_003401.1 + 117924 0.67 0.890387
Target:  5'- -gUCUGacccCGCGGCCcaaaucuGGGGcccaugguGGCGCGCg -3'
miRNA:   3'- gaAGAU----GUGCUGG-------UCCCuu------CCGCGCG- -5'
13193 5' -54.9 NC_003401.1 + 30212 0.67 0.877003
Target:  5'- ------aACGACguGGGGGcgucuGGCGCGCg -3'
miRNA:   3'- gaagaugUGCUGguCCCUU-----CCGCGCG- -5'
13193 5' -54.9 NC_003401.1 + 125047 0.67 0.877003
Target:  5'- -gUCacgGCGggguCGACCAGGGAggccAGGUgGCGCc -3'
miRNA:   3'- gaAGa--UGU----GCUGGUCCCU----UCCG-CGCG- -5'
13193 5' -54.9 NC_003401.1 + 17666 0.67 0.877003
Target:  5'- ----aGCACGAacCCGGGGGccacGCGCGCc -3'
miRNA:   3'- gaagaUGUGCU--GGUCCCUuc--CGCGCG- -5'
13193 5' -54.9 NC_003401.1 + 53021 0.67 0.869632
Target:  5'- -gUCUGCuguCGugcGCCGGGGGcccgcAGGCGCa- -3'
miRNA:   3'- gaAGAUGu--GC---UGGUCCCU-----UCCGCGcg -5'
13193 5' -54.9 NC_003401.1 + 100952 0.67 0.869632
Target:  5'- -gUCUG-ACGACgaAGGGGccccacguAGGCGCGUa -3'
miRNA:   3'- gaAGAUgUGCUGg-UCCCU--------UCCGCGCG- -5'
13193 5' -54.9 NC_003401.1 + 20536 0.68 0.862043
Target:  5'- -cUCUugACAgGACCAGGG--GGCGCc- -3'
miRNA:   3'- gaAGA--UGUgCUGGUCCCuuCCGCGcg -5'
13193 5' -54.9 NC_003401.1 + 121886 0.68 0.858948
Target:  5'- gUUCUGCaaccgcccgcacuuGCGGCCcugauguuguuggAGcGGggGGCGCGg -3'
miRNA:   3'- gAAGAUG--------------UGCUGG-------------UC-CCuuCCGCGCg -5'
13193 5' -54.9 NC_003401.1 + 42346 0.68 0.85345
Target:  5'- ----aACGCGACCGGcacgcgcugggccGGcAGGCGCGUc -3'
miRNA:   3'- gaagaUGUGCUGGUC-------------CCuUCCGCGCG- -5'
13193 5' -54.9 NC_003401.1 + 92845 0.68 0.829628
Target:  5'- -cUCgUAUACGACaAGGGAcacgcguuugggGGGCGgGCa -3'
miRNA:   3'- gaAG-AUGUGCUGgUCCCU------------UCCGCgCG- -5'
13193 5' -54.9 NC_003401.1 + 64526 0.69 0.8114
Target:  5'- ---gUGgGCGguaGCCAGGGGAgacggauGGCGCGCc -3'
miRNA:   3'- gaagAUgUGC---UGGUCCCUU-------CCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.