miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13194 5' -59.9 NC_003401.1 + 89695 0.66 0.712839
Target:  5'- gCAGGgGCGUcCCUGGCucaagcccauGGACgcaGGCCGc- -3'
miRNA:   3'- -GUCCgCGCA-GGACUG----------CCUG---CCGGUug -5'
13194 5' -59.9 NC_003401.1 + 115763 0.66 0.693121
Target:  5'- gGGGUGC-UCCggGugGgGGCGGCuCGGCu -3'
miRNA:   3'- gUCCGCGcAGGa-CugC-CUGCCG-GUUG- -5'
13194 5' -59.9 NC_003401.1 + 49736 0.66 0.690145
Target:  5'- cCAGGCGCGcggcggaugUCCUGGuuacCGGACacguuaaucuuuugGGCCuGCu -3'
miRNA:   3'- -GUCCGCGC---------AGGACU----GCCUG--------------CCGGuUG- -5'
13194 5' -59.9 NC_003401.1 + 132659 0.66 0.683184
Target:  5'- gGGGCGCGgcgCCgc-CGGGCucGGCCGGa -3'
miRNA:   3'- gUCCGCGCa--GGacuGCCUG--CCGGUUg -5'
13194 5' -59.9 NC_003401.1 + 132496 0.67 0.663196
Target:  5'- gCGGGCcCGggCCggcggGGCGGAgGGCCGGg -3'
miRNA:   3'- -GUCCGcGCa-GGa----CUGCCUgCCGGUUg -5'
13194 5' -59.9 NC_003401.1 + 40320 0.67 0.663196
Target:  5'- uCGGGaCGCGg--UGGCGGACGGgCAGg -3'
miRNA:   3'- -GUCC-GCGCaggACUGCCUGCCgGUUg -5'
13194 5' -59.9 NC_003401.1 + 28171 0.67 0.653162
Target:  5'- -cGGUGCGUac-GAUgGGACGGUCAGCu -3'
miRNA:   3'- guCCGCGCAggaCUG-CCUGCCGGUUG- -5'
13194 5' -59.9 NC_003401.1 + 117897 0.67 0.643111
Target:  5'- cCGGGCGCGggggUUCggcGGCGGugGcaccgcGCCAGCg -3'
miRNA:   3'- -GUCCGCGC----AGGa--CUGCCugC------CGGUUG- -5'
13194 5' -59.9 NC_003401.1 + 115247 0.67 0.643111
Target:  5'- gGGGUGCagGUCCcccgGugGGAgCGGCuCGGCu -3'
miRNA:   3'- gUCCGCG--CAGGa---CugCCU-GCCG-GUUG- -5'
13194 5' -59.9 NC_003401.1 + 132402 0.67 0.633052
Target:  5'- cCGGGCGCaagaUGGCGGccGCGGcCCGGCg -3'
miRNA:   3'- -GUCCGCGcaggACUGCC--UGCC-GGUUG- -5'
13194 5' -59.9 NC_003401.1 + 20377 0.68 0.61294
Target:  5'- aCAGGCGCccccugGUCCUGucaagagaggcGCGGuugcCGGCCcACu -3'
miRNA:   3'- -GUCCGCG------CAGGAC-----------UGCCu---GCCGGuUG- -5'
13194 5' -59.9 NC_003401.1 + 8912 0.68 0.592883
Target:  5'- gCAGGCGC--CCUGugGcGGCGaCCGGCu -3'
miRNA:   3'- -GUCCGCGcaGGACugC-CUGCcGGUUG- -5'
13194 5' -59.9 NC_003401.1 + 129324 0.68 0.592883
Target:  5'- uGGGUGUgGUCUcacuaaGGACGGCCAACu -3'
miRNA:   3'- gUCCGCG-CAGGacug--CCUGCCGGUUG- -5'
13194 5' -59.9 NC_003401.1 + 120911 0.68 0.589882
Target:  5'- cCAGGUGCGUCCggcaaaacGCGGACGcuggaugcucuaauGCCGGg -3'
miRNA:   3'- -GUCCGCGCAGGac------UGCCUGC--------------CGGUUg -5'
13194 5' -59.9 NC_003401.1 + 15839 0.68 0.572936
Target:  5'- uCAGGaCGCG-CCUGGCcuGAaucuUGGCCAGCu -3'
miRNA:   3'- -GUCC-GCGCaGGACUGc-CU----GCCGGUUG- -5'
13194 5' -59.9 NC_003401.1 + 14166 0.68 0.572936
Target:  5'- --cGCGCGgCuCUGGCGGGCGGCaaguACa -3'
miRNA:   3'- gucCGCGCaG-GACUGCCUGCCGgu--UG- -5'
13194 5' -59.9 NC_003401.1 + 125077 0.68 0.572936
Target:  5'- -uGGCGCccGUCCggugacgugaUGGCGGccACGGCCGAg -3'
miRNA:   3'- guCCGCG--CAGG----------ACUGCC--UGCCGGUUg -5'
13194 5' -59.9 NC_003401.1 + 94698 0.69 0.553152
Target:  5'- uGGGCauugGCGUCCaa--GGACuGGCCGACg -3'
miRNA:   3'- gUCCG----CGCAGGacugCCUG-CCGGUUG- -5'
13194 5' -59.9 NC_003401.1 + 75405 0.69 0.543335
Target:  5'- aGGGCGCGUauu--CGGGCGGUCAGa -3'
miRNA:   3'- gUCCGCGCAggacuGCCUGCCGGUUg -5'
13194 5' -59.9 NC_003401.1 + 132559 0.69 0.533576
Target:  5'- -cGGCGCGcggcUCCcgaUGcCGGGCGGCCGc- -3'
miRNA:   3'- guCCGCGC----AGG---ACuGCCUGCCGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.