Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13194 | 5' | -59.9 | NC_003401.1 | + | 15692 | 1.09 | 0.001047 |
Target: 5'- cCAGGCGCGUCCUGACGGACGGCCAACa -3' miRNA: 3'- -GUCCGCGCAGGACUGCCUGCCGGUUG- -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 86394 | 0.71 | 0.397117 |
Target: 5'- -cGGCGgGguucaUCUGACaGGACGGCCAAa -3' miRNA: 3'- guCCGCgCa----GGACUG-CCUGCCGGUUg -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 16481 | 0.71 | 0.405517 |
Target: 5'- --cGCGCGcCgUGACGGGCGGUCAc- -3' miRNA: 3'- gucCGCGCaGgACUGCCUGCCGGUug -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 125420 | 0.71 | 0.422646 |
Target: 5'- gGGGCcuCGUCCUcccAgGGugGGCCAACg -3' miRNA: 3'- gUCCGc-GCAGGAc--UgCCugCCGGUUG- -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 132524 | 0.69 | 0.504698 |
Target: 5'- -cGGCGCGgggcggCCgggGGCGG-CGGCCGc- -3' miRNA: 3'- guCCGCGCa-----GGa--CUGCCuGCCGGUug -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 104680 | 0.69 | 0.52388 |
Target: 5'- -cGGCGCGcCCggcGAUGGACucgguGGCCAGa -3' miRNA: 3'- guCCGCGCaGGa--CUGCCUG-----CCGGUUg -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 132559 | 0.69 | 0.533576 |
Target: 5'- -cGGCGCGcggcUCCcgaUGcCGGGCGGCCGc- -3' miRNA: 3'- guCCGCGC----AGG---ACuGCCUGCCGGUug -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 75405 | 0.69 | 0.543335 |
Target: 5'- aGGGCGCGUauu--CGGGCGGUCAGa -3' miRNA: 3'- gUCCGCGCAggacuGCCUGCCGGUUg -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 94698 | 0.69 | 0.553152 |
Target: 5'- uGGGCauugGCGUCCaa--GGACuGGCCGACg -3' miRNA: 3'- gUCCG----CGCAGGacugCCUG-CCGGUUG- -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 15839 | 0.68 | 0.572936 |
Target: 5'- uCAGGaCGCG-CCUGGCcuGAaucuUGGCCAGCu -3' miRNA: 3'- -GUCC-GCGCaGGACUGc-CU----GCCGGUUG- -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 14166 | 0.68 | 0.572936 |
Target: 5'- --cGCGCGgCuCUGGCGGGCGGCaaguACa -3' miRNA: 3'- gucCGCGCaG-GACUGCCUGCCGgu--UG- -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 125077 | 0.68 | 0.572936 |
Target: 5'- -uGGCGCccGUCCggugacgugaUGGCGGccACGGCCGAg -3' miRNA: 3'- guCCGCG--CAGG----------ACUGCC--UGCCGGUUg -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 120911 | 0.68 | 0.589882 |
Target: 5'- cCAGGUGCGUCCggcaaaacGCGGACGcuggaugcucuaauGCCGGg -3' miRNA: 3'- -GUCCGCGCAGGac------UGCCUGC--------------CGGUUg -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 8912 | 0.68 | 0.592883 |
Target: 5'- gCAGGCGC--CCUGugGcGGCGaCCGGCu -3' miRNA: 3'- -GUCCGCGcaGGACugC-CUGCcGGUUG- -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 129324 | 0.68 | 0.592883 |
Target: 5'- uGGGUGUgGUCUcacuaaGGACGGCCAACu -3' miRNA: 3'- gUCCGCG-CAGGacug--CCUGCCGGUUG- -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 20377 | 0.68 | 0.61294 |
Target: 5'- aCAGGCGCccccugGUCCUGucaagagaggcGCGGuugcCGGCCcACu -3' miRNA: 3'- -GUCCGCG------CAGGAC-----------UGCCu---GCCGGuUG- -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 132402 | 0.67 | 0.633052 |
Target: 5'- cCGGGCGCaagaUGGCGGccGCGGcCCGGCg -3' miRNA: 3'- -GUCCGCGcaggACUGCC--UGCC-GGUUG- -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 117897 | 0.67 | 0.643111 |
Target: 5'- cCGGGCGCGggggUUCggcGGCGGugGcaccgcGCCAGCg -3' miRNA: 3'- -GUCCGCGC----AGGa--CUGCCugC------CGGUUG- -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 115247 | 0.67 | 0.643111 |
Target: 5'- gGGGUGCagGUCCcccgGugGGAgCGGCuCGGCu -3' miRNA: 3'- gUCCGCG--CAGGa---CugCCU-GCCG-GUUG- -5' |
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13194 | 5' | -59.9 | NC_003401.1 | + | 28171 | 0.67 | 0.653162 |
Target: 5'- -cGGUGCGUac-GAUgGGACGGUCAGCu -3' miRNA: 3'- guCCGCGCAggaCUG-CCUGCCGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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