Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13194 | 5' | -59.9 | NC_003401.1 | + | 104680 | 0.69 | 0.52388 |
|
Target: 5'- -cGGCGCGcCCggcGAUGGACucgguGGCCAGa -3' miRNA: 3'- guCCGCGCaGGa--CUGCCUG-----CCGGUUg -5' |
|||||||
| 13194 | 5' | -59.9 | NC_003401.1 | + | 132524 | 0.69 | 0.504698 |
|
Target: 5'- -cGGCGCGgggcggCCgggGGCGG-CGGCCGc- -3' miRNA: 3'- guCCGCGCa-----GGa--CUGCCuGCCGGUug -5' |
|||||||
| 13194 | 5' | -59.9 | NC_003401.1 | + | 125420 | 0.71 | 0.422646 |
|
Target: 5'- gGGGCcuCGUCCUcccAgGGugGGCCAACg -3' miRNA: 3'- gUCCGc-GCAGGAc--UgCCugCCGGUUG- -5' |
|||||||
| 13194 | 5' | -59.9 | NC_003401.1 | + | 16481 | 0.71 | 0.405517 |
|
Target: 5'- --cGCGCGcCgUGACGGGCGGUCAc- -3' miRNA: 3'- gucCGCGCaGgACUGCCUGCCGGUug -5' |
|||||||
| 13194 | 5' | -59.9 | NC_003401.1 | + | 86394 | 0.71 | 0.397117 |
|
Target: 5'- -cGGCGgGguucaUCUGACaGGACGGCCAAa -3' miRNA: 3'- guCCGCgCa----GGACUG-CCUGCCGGUUg -5' |
|||||||
| 13194 | 5' | -59.9 | NC_003401.1 | + | 15692 | 1.09 | 0.001047 |
|
Target: 5'- cCAGGCGCGUCCUGACGGACGGCCAACa -3' miRNA: 3'- -GUCCGCGCAGGACUGCCUGCCGGUUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home