miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13196 3' -54.4 NC_003401.1 + 51597 0.65 0.953477
Target:  5'- -cGAGGCCUcGCGGuuGCGCGcagccaucgcucgUCUCGGg- -3'
miRNA:   3'- ccUUCUGGA-CGCU--UGCGC-------------AGAGCCag -5'
13196 3' -54.4 NC_003401.1 + 18136 0.66 0.945437
Target:  5'- gGGAGcGGCCgcucgggGCGAucugGCGUUUCuGGUCa -3'
miRNA:   3'- -CCUU-CUGGa------CGCUug--CGCAGAG-CCAG- -5'
13196 3' -54.4 NC_003401.1 + 27907 0.66 0.936043
Target:  5'- cGGAGG-UCUGCG-ACGCGgCUCguuuuaGGUCc -3'
miRNA:   3'- -CCUUCuGGACGCuUGCGCaGAG------CCAG- -5'
13196 3' -54.4 NC_003401.1 + 21462 0.67 0.902035
Target:  5'- cGggGACCgccGCGAGgGCGaUCUgGGg- -3'
miRNA:   3'- cCuuCUGGa--CGCUUgCGC-AGAgCCag -5'
13196 3' -54.4 NC_003401.1 + 40857 0.68 0.874605
Target:  5'- ----uACCUGUGAACGUGUC-CGGg- -3'
miRNA:   3'- ccuucUGGACGCUUGCGCAGaGCCag -5'
13196 3' -54.4 NC_003401.1 + 57341 0.68 0.867184
Target:  5'- uGGAAGACC-GCGAAgGC-UCgacguaaccgCGGUCc -3'
miRNA:   3'- -CCUUCUGGaCGCUUgCGcAGa---------GCCAG- -5'
13196 3' -54.4 NC_003401.1 + 62503 0.69 0.826972
Target:  5'- cGGAcGGuCUUGCGAAUGCGUCUCc--- -3'
miRNA:   3'- -CCU-UCuGGACGCUUGCGCAGAGccag -5'
13196 3' -54.4 NC_003401.1 + 13879 0.7 0.772874
Target:  5'- uGggGGCCUggGCGAugGCGUUggugcgcCGGUUu -3'
miRNA:   3'- cCuuCUGGA--CGCUugCGCAGa------GCCAG- -5'
13196 3' -54.4 NC_003401.1 + 102138 0.72 0.663215
Target:  5'- uGAGGGCUU-CGGugGCGUCcUCGGUUa -3'
miRNA:   3'- cCUUCUGGAcGCUugCGCAG-AGCCAG- -5'
13196 3' -54.4 NC_003401.1 + 92626 0.73 0.621926
Target:  5'- uGGggGAC--GCGGGCGU-UCUCGGUCu -3'
miRNA:   3'- -CCuuCUGgaCGCUUGCGcAGAGCCAG- -5'
13196 3' -54.4 NC_003401.1 + 16294 1.13 0.002191
Target:  5'- cGGAAGACCUGCGAACGCGUCUCGGUCg -3'
miRNA:   3'- -CCUUCUGGACGCUUGCGCAGAGCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.