miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13196 5' -59.4 NC_003401.1 + 132719 0.66 0.800415
Target:  5'- gCCGCCCGgCAuCGGgagcCGCGCGc---CGCg -3'
miRNA:   3'- -GGCGGGCaGU-GCC----GCGCGCcaaaGCG- -5'
13196 5' -59.4 NC_003401.1 + 118882 0.66 0.800415
Target:  5'- gCCGCgCCGccaaGCGGCGCGgcCGGUUcUGg -3'
miRNA:   3'- -GGCG-GGCag--UGCCGCGC--GCCAAaGCg -5'
13196 5' -59.4 NC_003401.1 + 41302 0.66 0.791699
Target:  5'- aCGCCCaUUACcgaaaaguuuuuGGCGaacuCGUGGUUUUGCa -3'
miRNA:   3'- gGCGGGcAGUG------------CCGC----GCGCCAAAGCG- -5'
13196 5' -59.4 NC_003401.1 + 117758 0.66 0.791699
Target:  5'- gCGCCCGUU-CGGCGUGacc--UCGCc -3'
miRNA:   3'- gGCGGGCAGuGCCGCGCgccaaAGCG- -5'
13196 5' -59.4 NC_003401.1 + 105085 0.66 0.782848
Target:  5'- uCUGCCC--CGCGGCGUGCccuGGU--UGCg -3'
miRNA:   3'- -GGCGGGcaGUGCCGCGCG---CCAaaGCG- -5'
13196 5' -59.4 NC_003401.1 + 74031 0.66 0.782848
Target:  5'- aCCGCCC---GCGGCGCaaaGgGGUUggggUCGUc -3'
miRNA:   3'- -GGCGGGcagUGCCGCG---CgCCAA----AGCG- -5'
13196 5' -59.4 NC_003401.1 + 51588 0.66 0.782848
Target:  5'- cCCGCCguUCGaGGCcuCGCGGUUgcgCGCa -3'
miRNA:   3'- -GGCGGgcAGUgCCGc-GCGCCAAa--GCG- -5'
13196 5' -59.4 NC_003401.1 + 10176 0.66 0.773871
Target:  5'- aCGCCaCGcagCACGGCGUcCGGUccUCuGCa -3'
miRNA:   3'- gGCGG-GCa--GUGCCGCGcGCCAa-AG-CG- -5'
13196 5' -59.4 NC_003401.1 + 8884 0.66 0.764776
Target:  5'- aCGCgCCGUCgucuggACGGUGaggGCGGUgcggcCGCg -3'
miRNA:   3'- gGCG-GGCAG------UGCCGCg--CGCCAaa---GCG- -5'
13196 5' -59.4 NC_003401.1 + 86642 0.66 0.764776
Target:  5'- cCCGCCgCGUgACuGUGCGUGGauUUUCa- -3'
miRNA:   3'- -GGCGG-GCAgUGcCGCGCGCC--AAAGcg -5'
13196 5' -59.4 NC_003401.1 + 21306 0.66 0.764776
Target:  5'- gCGCaUCGUUAUGuGCGCGUGGaacccCGCg -3'
miRNA:   3'- gGCG-GGCAGUGC-CGCGCGCCaaa--GCG- -5'
13196 5' -59.4 NC_003401.1 + 18519 0.67 0.755571
Target:  5'- gCGCCCcgguGUCugGuGaCGCGacgaGGUcUCGCg -3'
miRNA:   3'- gGCGGG----CAGugC-C-GCGCg---CCAaAGCG- -5'
13196 5' -59.4 NC_003401.1 + 23384 0.67 0.754645
Target:  5'- gUCGCCaGUCGC-GCGCGUGGcaacaucUUUCGg -3'
miRNA:   3'- -GGCGGgCAGUGcCGCGCGCC-------AAAGCg -5'
13196 5' -59.4 NC_003401.1 + 8722 0.67 0.746264
Target:  5'- aCCGCCCucaccGUCcagacgACGGCGCGUcagccGG--UCGCc -3'
miRNA:   3'- -GGCGGG-----CAG------UGCCGCGCG-----CCaaAGCG- -5'
13196 5' -59.4 NC_003401.1 + 43320 0.67 0.746264
Target:  5'- gCGCUgGUCGcCGGCGUucccgugagGCGGgc-CGCg -3'
miRNA:   3'- gGCGGgCAGU-GCCGCG---------CGCCaaaGCG- -5'
13196 5' -59.4 NC_003401.1 + 10610 0.67 0.736864
Target:  5'- -aGCauccugCGUCAgGGgaGCGCGGgaUCGCa -3'
miRNA:   3'- ggCGg-----GCAGUgCCg-CGCGCCaaAGCG- -5'
13196 5' -59.4 NC_003401.1 + 132382 0.67 0.736864
Target:  5'- gCgGCCCGgcgGCGGCGC-CGGccgggCGCc -3'
miRNA:   3'- -GgCGGGCag-UGCCGCGcGCCaaa--GCG- -5'
13196 5' -59.4 NC_003401.1 + 118292 0.67 0.727379
Target:  5'- gCCGUCCGgugccCAUGGgGCGgcuuuugccgccCGGggUCGCc -3'
miRNA:   3'- -GGCGGGCa----GUGCCgCGC------------GCCaaAGCG- -5'
13196 5' -59.4 NC_003401.1 + 11766 0.67 0.727379
Target:  5'- -gGCCCGgcguuggcuUCGCGGUG-GUGGUcgCGCc -3'
miRNA:   3'- ggCGGGC---------AGUGCCGCgCGCCAaaGCG- -5'
13196 5' -59.4 NC_003401.1 + 15036 0.67 0.717816
Target:  5'- gCCGCCag--GCGGgGCGUGGcg-CGCg -3'
miRNA:   3'- -GGCGGgcagUGCCgCGCGCCaaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.