miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13196 5' -59.4 NC_003401.1 + 8722 0.67 0.746264
Target:  5'- aCCGCCCucaccGUCcagacgACGGCGCGUcagccGG--UCGCc -3'
miRNA:   3'- -GGCGGG-----CAG------UGCCGCGCG-----CCaaAGCG- -5'
13196 5' -59.4 NC_003401.1 + 8884 0.66 0.764776
Target:  5'- aCGCgCCGUCgucuggACGGUGaggGCGGUgcggcCGCg -3'
miRNA:   3'- gGCG-GGCAG------UGCCGCg--CGCCAaa---GCG- -5'
13196 5' -59.4 NC_003401.1 + 10176 0.66 0.773871
Target:  5'- aCGCCaCGcagCACGGCGUcCGGUccUCuGCa -3'
miRNA:   3'- gGCGG-GCa--GUGCCGCGcGCCAa-AG-CG- -5'
13196 5' -59.4 NC_003401.1 + 10610 0.67 0.736864
Target:  5'- -aGCauccugCGUCAgGGgaGCGCGGgaUCGCa -3'
miRNA:   3'- ggCGg-----GCAGUgCCg-CGCGCCaaAGCG- -5'
13196 5' -59.4 NC_003401.1 + 11766 0.67 0.727379
Target:  5'- -gGCCCGgcguuggcuUCGCGGUG-GUGGUcgCGCc -3'
miRNA:   3'- ggCGGGC---------AGUGCCGCgCGCCAaaGCG- -5'
13196 5' -59.4 NC_003401.1 + 14013 0.7 0.580366
Target:  5'- gCCGCCCGcCAgaGcCGCGCGGccaaucgaUUCGCg -3'
miRNA:   3'- -GGCGGGCaGUg-CcGCGCGCCa-------AAGCG- -5'
13196 5' -59.4 NC_003401.1 + 14775 0.7 0.580366
Target:  5'- aCCGCCuCGUCGCGuGCGgGUgcgaGGUgUUCGa -3'
miRNA:   3'- -GGCGG-GCAGUGC-CGCgCG----CCA-AAGCg -5'
13196 5' -59.4 NC_003401.1 + 15036 0.67 0.717816
Target:  5'- gCCGCCag--GCGGgGCGUGGcg-CGCg -3'
miRNA:   3'- -GGCGGgcagUGCCgCGCGCCaaaGCG- -5'
13196 5' -59.4 NC_003401.1 + 16329 1.14 0.000758
Target:  5'- aCCGCCCGUCACGGCGCGCGGUUUCGCg -3'
miRNA:   3'- -GGCGGGCAGUGCCGCGCGCCAAAGCG- -5'
13196 5' -59.4 NC_003401.1 + 17472 0.7 0.541521
Target:  5'- aUCGcCCCGUUggauuccgGCGGCGaCGCGGacgcggCGCg -3'
miRNA:   3'- -GGC-GGGCAG--------UGCCGC-GCGCCaaa---GCG- -5'
13196 5' -59.4 NC_003401.1 + 18519 0.67 0.755571
Target:  5'- gCGCCCcgguGUCugGuGaCGCGacgaGGUcUCGCg -3'
miRNA:   3'- gGCGGG----CAGugC-C-GCGCg---CCAaAGCG- -5'
13196 5' -59.4 NC_003401.1 + 18808 0.71 0.503581
Target:  5'- cCCGCCgugGUCGa-GCGCGCGGa-UCGCg -3'
miRNA:   3'- -GGCGGg--CAGUgcCGCGCGCCaaAGCG- -5'
13196 5' -59.4 NC_003401.1 + 18957 0.69 0.589196
Target:  5'- gCGCUCGaCACGGCGgGUacuauguccagugGGUUgUCGCg -3'
miRNA:   3'- gGCGGGCaGUGCCGCgCG-------------CCAA-AGCG- -5'
13196 5' -59.4 NC_003401.1 + 19803 0.71 0.494273
Target:  5'- cCCGCCCGgcagcucCAgGGCGCGCGa--UCGg -3'
miRNA:   3'- -GGCGGGCa------GUgCCGCGCGCcaaAGCg -5'
13196 5' -59.4 NC_003401.1 + 20276 0.68 0.649422
Target:  5'- gCGCCCGgggaCGCGGaCGCcGCGGccaUUgGCu -3'
miRNA:   3'- gGCGGGCa---GUGCC-GCG-CGCCa--AAgCG- -5'
13196 5' -59.4 NC_003401.1 + 21306 0.66 0.764776
Target:  5'- gCGCaUCGUUAUGuGCGCGUGGaacccCGCg -3'
miRNA:   3'- gGCG-GGCAGUGC-CGCGCGCCaaa--GCG- -5'
13196 5' -59.4 NC_003401.1 + 23020 0.71 0.485044
Target:  5'- cCCGCgCGUCugGGgGUGCGuuGUcucguuguggUUCGCa -3'
miRNA:   3'- -GGCGgGCAGugCCgCGCGC--CA----------AAGCG- -5'
13196 5' -59.4 NC_003401.1 + 23384 0.67 0.754645
Target:  5'- gUCGCCaGUCGC-GCGCGUGGcaacaucUUUCGg -3'
miRNA:   3'- -GGCGGgCAGUGcCGCGCGCC-------AAAGCg -5'
13196 5' -59.4 NC_003401.1 + 23789 0.69 0.629649
Target:  5'- gCCGgCCGcUCGCGGCGCcCGuGUUUUugGCc -3'
miRNA:   3'- -GGCgGGC-AGUGCCGCGcGC-CAAAG--CG- -5'
13196 5' -59.4 NC_003401.1 + 23837 0.69 0.607908
Target:  5'- uCCGCCauuuugccaaaUCGCGGCGUGgGGgaaagCGCg -3'
miRNA:   3'- -GGCGGgc---------AGUGCCGCGCgCCaaa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.