miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13197 3' -58.7 NC_003401.1 + 52424 0.66 0.808014
Target:  5'- uGGGGccaguguagucaccaGGCGACgGACuG-GACCGCCGu -3'
miRNA:   3'- gCUCC---------------UCGCUGgUUGcCuCUGGCGGU- -5'
13197 3' -58.7 NC_003401.1 + 117814 0.66 0.808014
Target:  5'- gCGAuGGGC-ACCGGCGGcaacauuauucgcuGACCGCCGg -3'
miRNA:   3'- -GCUcCUCGcUGGUUGCCu-------------CUGGCGGU- -5'
13197 3' -58.7 NC_003401.1 + 133526 0.66 0.808014
Target:  5'- aCGAGGAcacGgGACC--CGGgccucucccccgcccGGACCGCCGg -3'
miRNA:   3'- -GCUCCU---CgCUGGuuGCC---------------UCUGGCGGU- -5'
13197 3' -58.7 NC_003401.1 + 21495 0.66 0.801907
Target:  5'- -cGGGucccgcgccuuuuuGGCGGCgCAGggcuuCGGGGACCGCCGc -3'
miRNA:   3'- gcUCC--------------UCGCUG-GUU-----GCCUCUGGCGGU- -5'
13197 3' -58.7 NC_003401.1 + 12590 0.66 0.795727
Target:  5'- uGGGGAagguuuuccagaGCG-UCAGCGcGcAGACCGCCGa -3'
miRNA:   3'- gCUCCU------------CGCuGGUUGC-C-UCUGGCGGU- -5'
13197 3' -58.7 NC_003401.1 + 117602 0.66 0.786778
Target:  5'- aGAcGGccgcGGCGACCAAUGGccGCCGCgGg -3'
miRNA:   3'- gCU-CC----UCGCUGGUUGCCucUGGCGgU- -5'
13197 3' -58.7 NC_003401.1 + 20741 0.66 0.785876
Target:  5'- gGGGGuuGGCGGCCGguguguuuuuaAUGGAccuggcguugaccGGCCGCCGc -3'
miRNA:   3'- gCUCC--UCGCUGGU-----------UGCCU-------------CUGGCGGU- -5'
13197 3' -58.7 NC_003401.1 + 23482 0.66 0.777695
Target:  5'- uCGGGGAGCcggGugCAggGCGGGGGCgUGCUu -3'
miRNA:   3'- -GCUCCUCG---CugGU--UGCCUCUG-GCGGu -5'
13197 3' -58.7 NC_003401.1 + 122982 0.66 0.759158
Target:  5'- -aGGGAcGCGGuaGagugcACGGGGACCGCCGc -3'
miRNA:   3'- gcUCCU-CGCUggU-----UGCCUCUGGCGGU- -5'
13197 3' -58.7 NC_003401.1 + 29981 0.66 0.759158
Target:  5'- cCGGGGGGCGAUgGGugcgaaaGGAuGGCgGCCAg -3'
miRNA:   3'- -GCUCCUCGCUGgUUg------CCU-CUGgCGGU- -5'
13197 3' -58.7 NC_003401.1 + 87143 0.67 0.749722
Target:  5'- aGAGGAcacgGCGGCCGAgGGcuaAGG-CGCCAc -3'
miRNA:   3'- gCUCCU----CGCUGGUUgCC---UCUgGCGGU- -5'
13197 3' -58.7 NC_003401.1 + 132751 0.67 0.730559
Target:  5'- aGGGGAGCGGggGACaGGGGACgGCg- -3'
miRNA:   3'- gCUCCUCGCUggUUG-CCUCUGgCGgu -5'
13197 3' -58.7 NC_003401.1 + 20454 0.67 0.730559
Target:  5'- gGGGGAgGCG-CCAGCGuagggcuGGCCGCCc -3'
miRNA:   3'- gCUCCU-CGCuGGUUGCcu-----CUGGCGGu -5'
13197 3' -58.7 NC_003401.1 + 16 0.67 0.730559
Target:  5'- aGGGGAGCGGggGACaGGGGACgGCg- -3'
miRNA:   3'- gCUCCUCGCUggUUG-CCUCUGgCGgu -5'
13197 3' -58.7 NC_003401.1 + 132703 0.67 0.727654
Target:  5'- gCGGGGcGCGACCGagggccccgggagaACGGGGAUCGg-- -3'
miRNA:   3'- -GCUCCuCGCUGGU--------------UGCCUCUGGCggu -5'
13197 3' -58.7 NC_003401.1 + 132671 0.67 0.720849
Target:  5'- cCGGGGGGCGuCgGggcGCGGc-GCCGCCGg -3'
miRNA:   3'- -GCUCCUCGCuGgU---UGCCucUGGCGGU- -5'
13197 3' -58.7 NC_003401.1 + 69777 0.67 0.701218
Target:  5'- gCGGGGAccguuGCGGCgGuuucggcgaaggGCGGAGagccgGCCGCCAu -3'
miRNA:   3'- -GCUCCU-----CGCUGgU------------UGCCUC-----UGGCGGU- -5'
13197 3' -58.7 NC_003401.1 + 98551 0.68 0.689327
Target:  5'- aGGGGAacgggaaagaccCGAUUAAUGGAGugCGCCAc -3'
miRNA:   3'- gCUCCUc-----------GCUGGUUGCCUCugGCGGU- -5'
13197 3' -58.7 NC_003401.1 + 132485 0.68 0.661348
Target:  5'- cCGGcGGGGCGgagggccgggaGCCGGgGGAGGCCGgCGg -3'
miRNA:   3'- -GCU-CCUCGC-----------UGGUUgCCUCUGGCgGU- -5'
13197 3' -58.7 NC_003401.1 + 64325 0.68 0.660345
Target:  5'- -uGGGAGUGGCCGGCGGGGuCCuugacggGUCGg -3'
miRNA:   3'- gcUCCUCGCUGGUUGCCUCuGG-------CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.