Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13197 | 3' | -58.7 | NC_003401.1 | + | 17215 | 1.08 | 0.00184 |
Target: 5'- gCGAGGAGCGACCAACGGAGACCGCCAc -3' miRNA: 3'- -GCUCCUCGCUGGUUGCCUCUGGCGGU- -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 117814 | 0.66 | 0.808014 |
Target: 5'- gCGAuGGGC-ACCGGCGGcaacauuauucgcuGACCGCCGg -3' miRNA: 3'- -GCUcCUCGcUGGUUGCCu-------------CUGGCGGU- -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 133526 | 0.66 | 0.808014 |
Target: 5'- aCGAGGAcacGgGACC--CGGgccucucccccgcccGGACCGCCGg -3' miRNA: 3'- -GCUCCU---CgCUGGuuGCC---------------UCUGGCGGU- -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 52424 | 0.66 | 0.808014 |
Target: 5'- uGGGGccaguguagucaccaGGCGACgGACuG-GACCGCCGu -3' miRNA: 3'- gCUCC---------------UCGCUGgUUGcCuCUGGCGGU- -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 117602 | 0.66 | 0.786778 |
Target: 5'- aGAcGGccgcGGCGACCAAUGGccGCCGCgGg -3' miRNA: 3'- gCU-CC----UCGCUGGUUGCCucUGGCGgU- -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 29981 | 0.66 | 0.759158 |
Target: 5'- cCGGGGGGCGAUgGGugcgaaaGGAuGGCgGCCAg -3' miRNA: 3'- -GCUCCUCGCUGgUUg------CCU-CUGgCGGU- -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 132751 | 0.67 | 0.730559 |
Target: 5'- aGGGGAGCGGggGACaGGGGACgGCg- -3' miRNA: 3'- gCUCCUCGCUggUUG-CCUCUGgCGgu -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 20454 | 0.67 | 0.730559 |
Target: 5'- gGGGGAgGCG-CCAGCGuagggcuGGCCGCCc -3' miRNA: 3'- gCUCCU-CGCuGGUUGCcu-----CUGGCGGu -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 16 | 0.67 | 0.730559 |
Target: 5'- aGGGGAGCGGggGACaGGGGACgGCg- -3' miRNA: 3'- gCUCCUCGCUggUUG-CCUCUGgCGgu -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 132703 | 0.67 | 0.727654 |
Target: 5'- gCGGGGcGCGACCGagggccccgggagaACGGGGAUCGg-- -3' miRNA: 3'- -GCUCCuCGCUGGU--------------UGCCUCUGGCggu -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 119819 | 0.72 | 0.43577 |
Target: 5'- cCGAGGcuaaacagcgcgcaGGCGGCCGccaccagggACGGgggcAGACCGCCGg -3' miRNA: 3'- -GCUCC--------------UCGCUGGU---------UGCC----UCUGGCGGU- -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 119176 | 0.7 | 0.571044 |
Target: 5'- uGAGGGGCuGACCA----GGGCCGCCu -3' miRNA: 3'- gCUCCUCG-CUGGUugccUCUGGCGGu -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 103907 | 0.69 | 0.590991 |
Target: 5'- aGAGGccagcaucucGGCGGCCgAACGGcu-CCGCCAa -3' miRNA: 3'- gCUCC----------UCGCUGG-UUGCCucuGGCGGU- -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 119757 | 0.69 | 0.601011 |
Target: 5'- gCGAGGuuGCGGCCGaaacgccgACGGccuCCGCCAa -3' miRNA: 3'- -GCUCCu-CGCUGGU--------UGCCucuGGCGGU- -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 90721 | 0.69 | 0.63017 |
Target: 5'- cCGAGGAGCagaggcgucgucaGGCCAACaGAcagcguacccgcGGCCGCCc -3' miRNA: 3'- -GCUCCUCG-------------CUGGUUGcCU------------CUGGCGGu -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 64325 | 0.68 | 0.660345 |
Target: 5'- -uGGGAGUGGCCGGCGGGGuCCuugacggGUCGg -3' miRNA: 3'- gcUCCUCGCUGGUUGCCUCuGG-------CGGU- -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 21495 | 0.66 | 0.801907 |
Target: 5'- -cGGGucccgcgccuuuuuGGCGGCgCAGggcuuCGGGGACCGCCGc -3' miRNA: 3'- gcUCC--------------UCGCUG-GUU-----GCCUCUGGCGGU- -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 108732 | 0.74 | 0.339985 |
Target: 5'- aGGGGAGuCGACCGagACGGAGAuaucCCGCg- -3' miRNA: 3'- gCUCCUC-GCUGGU--UGCCUCU----GGCGgu -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 132522 | 0.73 | 0.39542 |
Target: 5'- gCGcGGGGCGGCCGgggGCGGcGGCCGCgGg -3' miRNA: 3'- -GCuCCUCGCUGGU---UGCCuCUGGCGgU- -5' |
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13197 | 3' | -58.7 | NC_003401.1 | + | 132602 | 0.71 | 0.522007 |
Target: 5'- cCGGcGGAGCGGCaccCGGGGGCgGCCc -3' miRNA: 3'- -GCU-CCUCGCUGguuGCCUCUGgCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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