miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13197 5' -50.6 NC_003401.1 + 16998 0.66 0.995831
Target:  5'- --gGugGGGCagGUUGGUGGUCUUguaaucgcagaCGGg -3'
miRNA:   3'- caaUugCUUGa-CAGCCACCAGGA-----------GCC- -5'
13197 5' -50.6 NC_003401.1 + 20871 0.66 0.995831
Target:  5'- --aAACGGACg--CGG-GGUCCUCc- -3'
miRNA:   3'- caaUUGCUUGacaGCCaCCAGGAGcc -5'
13197 5' -50.6 NC_003401.1 + 13029 0.66 0.992444
Target:  5'- -gUGACGGACUGcguggCGGUGGaCCa-GGc -3'
miRNA:   3'- caAUUGCUUGACa----GCCACCaGGagCC- -5'
13197 5' -50.6 NC_003401.1 + 87302 0.67 0.988691
Target:  5'- --cGACGcGACUGUCGGUgcaccGGuUCCaCGGg -3'
miRNA:   3'- caaUUGC-UUGACAGCCA-----CC-AGGaGCC- -5'
13197 5' -50.6 NC_003401.1 + 70147 0.68 0.977012
Target:  5'- --cGugGGACUGucUCGGUGGUgugaucuugcgUCUUGGg -3'
miRNA:   3'- caaUugCUUGAC--AGCCACCA-----------GGAGCC- -5'
13197 5' -50.6 NC_003401.1 + 103290 0.68 0.974421
Target:  5'- -----gGAACgg-CGGUGG-CCUCGGa -3'
miRNA:   3'- caauugCUUGacaGCCACCaGGAGCC- -5'
13197 5' -50.6 NC_003401.1 + 105817 0.68 0.971623
Target:  5'- --cGGCGggUgcUCGGUGGUcguuucucgCCUCGGc -3'
miRNA:   3'- caaUUGCuuGacAGCCACCA---------GGAGCC- -5'
13197 5' -50.6 NC_003401.1 + 121435 0.71 0.907722
Target:  5'- cGUUGGCG-AUUGg-GGUGGUCC-CGGu -3'
miRNA:   3'- -CAAUUGCuUGACagCCACCAGGaGCC- -5'
13197 5' -50.6 NC_003401.1 + 102141 0.72 0.873083
Target:  5'- uGUUGA-GGGCU-UCGGUGGcgUCCUCGGu -3'
miRNA:   3'- -CAAUUgCUUGAcAGCCACC--AGGAGCC- -5'
13197 5' -50.6 NC_003401.1 + 100842 0.74 0.796907
Target:  5'- uUUGGCGcucGACgUGUCGGUGGUgguUCUCGGc -3'
miRNA:   3'- cAAUUGC---UUG-ACAGCCACCA---GGAGCC- -5'
13197 5' -50.6 NC_003401.1 + 17249 1.1 0.008287
Target:  5'- gGUUAACGAACUGUCGGUGGUCCUCGGc -3'
miRNA:   3'- -CAAUUGCUUGACAGCCACCAGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.