miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13198 3' -52.9 NC_003401.1 + 26824 0.66 0.975612
Target:  5'- cGgCUGUUCAggGCCCUc-CGccGCCCCCu -3'
miRNA:   3'- -CgGAUAAGU--UGGGGuuGCcaUGGGGG- -5'
13198 3' -52.9 NC_003401.1 + 91126 0.66 0.975612
Target:  5'- aCCUuuuUUUAGCCCCggUGuuuuugcUGCCCCUg -3'
miRNA:   3'- cGGAu--AAGUUGGGGuuGCc------AUGGGGG- -5'
13198 3' -52.9 NC_003401.1 + 75637 0.66 0.972941
Target:  5'- aGUUUAc-CGACCCCcgcAACGGUuaACCCuCCg -3'
miRNA:   3'- -CGGAUaaGUUGGGG---UUGCCA--UGGG-GG- -5'
13198 3' -52.9 NC_003401.1 + 44223 0.66 0.972941
Target:  5'- gGCCgacgacaUAACgCgCAugGGUGCCCUCa -3'
miRNA:   3'- -CGGauaa---GUUGgG-GUugCCAUGGGGG- -5'
13198 3' -52.9 NC_003401.1 + 18296 0.66 0.970065
Target:  5'- cGCCagaUC-GCCCCgAGCGGccGCUCCCu -3'
miRNA:   3'- -CGGauaAGuUGGGG-UUGCCa-UGGGGG- -5'
13198 3' -52.9 NC_003401.1 + 69618 0.66 0.970065
Target:  5'- cGCCgaaaccGCCgCAACGGU-CCCCg -3'
miRNA:   3'- -CGGauaaguUGGgGUUGCCAuGGGGg -5'
13198 3' -52.9 NC_003401.1 + 60670 0.66 0.970065
Target:  5'- uGCCUAUugUCAGgcgcacCCCCGACGGcgacacgAUCgCCa -3'
miRNA:   3'- -CGGAUA--AGUU------GGGGUUGCCa------UGGgGG- -5'
13198 3' -52.9 NC_003401.1 + 93050 0.66 0.966976
Target:  5'- uUCUAaagUCAauaaacauaccGCCCCuguuCGGUGCCCgCCc -3'
miRNA:   3'- cGGAUa--AGU-----------UGGGGuu--GCCAUGGG-GG- -5'
13198 3' -52.9 NC_003401.1 + 119969 0.66 0.966976
Target:  5'- cGCgCUGUUUAGCCUCGgugccgcuGCGccGCCUCCg -3'
miRNA:   3'- -CG-GAUAAGUUGGGGU--------UGCcaUGGGGG- -5'
13198 3' -52.9 NC_003401.1 + 132335 0.66 0.966655
Target:  5'- gGCCc--UCcGCCCCGccggcccgggcccGCGGccgccGCCCCCg -3'
miRNA:   3'- -CGGauaAGuUGGGGU-------------UGCCa----UGGGGG- -5'
13198 3' -52.9 NC_003401.1 + 114058 0.66 0.966655
Target:  5'- aGCCUGUUUuGCCCgcaauaaCAACGGUAacaCCg -3'
miRNA:   3'- -CGGAUAAGuUGGG-------GUUGCCAUgggGG- -5'
13198 3' -52.9 NC_003401.1 + 74800 0.66 0.966332
Target:  5'- uCCUAcUCAcuggcggACCgaaauagCCAugGGUcuGCCCCCg -3'
miRNA:   3'- cGGAUaAGU-------UGG-------GGUugCCA--UGGGGG- -5'
13198 3' -52.9 NC_003401.1 + 126432 0.66 0.963668
Target:  5'- uGCCUGgacgacUUC-ACCUCGGCGGUGgCCg- -3'
miRNA:   3'- -CGGAU------AAGuUGGGGUUGCCAUgGGgg -5'
13198 3' -52.9 NC_003401.1 + 118183 0.66 0.963668
Target:  5'- cCCgcgggCGACCCCGGCGGcgGCaCCgCg -3'
miRNA:   3'- cGGauaa-GUUGGGGUUGCCa-UG-GGgG- -5'
13198 3' -52.9 NC_003401.1 + 82788 0.67 0.960136
Target:  5'- aCUUAUUCAcgGCCuCCucGCGcaACCCCCg -3'
miRNA:   3'- cGGAUAAGU--UGG-GGu-UGCcaUGGGGG- -5'
13198 3' -52.9 NC_003401.1 + 21186 0.67 0.956373
Target:  5'- cGCCUGUUaauuaGAUCCaccacguaacgCAGCuGGUccACCCCCu -3'
miRNA:   3'- -CGGAUAAg----UUGGG-----------GUUG-CCA--UGGGGG- -5'
13198 3' -52.9 NC_003401.1 + 85841 0.67 0.956373
Target:  5'- uUCUua-CGGCuCCCAGCaGGcGCCCCCu -3'
miRNA:   3'- cGGAuaaGUUG-GGGUUG-CCaUGGGGG- -5'
13198 3' -52.9 NC_003401.1 + 38818 0.67 0.956373
Target:  5'- aGCC-AUUCAAaauCCUCAcgcuagcuCGGUguccGCCCCCg -3'
miRNA:   3'- -CGGaUAAGUU---GGGGUu-------GCCA----UGGGGG- -5'
13198 3' -52.9 NC_003401.1 + 48889 0.67 0.956373
Target:  5'- uGCUUAguugUCucccuACCCUGACcgccuggcuGGUGCUCCCg -3'
miRNA:   3'- -CGGAUa---AGu----UGGGGUUG---------CCAUGGGGG- -5'
13198 3' -52.9 NC_003401.1 + 118360 0.67 0.952376
Target:  5'- -----aUCAcCCCCAgcgcccGCGGUGCCgCCg -3'
miRNA:   3'- cggauaAGUuGGGGU------UGCCAUGGgGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.