miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
132 3' -59.9 AC_000006.1 + 14993 0.66 0.377122
Target:  5'- cGCuGGACUcCGCGGauacugcuGCGcAGCGGuaGCg -3'
miRNA:   3'- cCGuCCUGA-GCGUC--------UGC-UCGCCggCG- -5'
132 3' -59.9 AC_000006.1 + 24434 0.66 0.368408
Target:  5'- aGCuGGGGgUUGCAGACcagGAGCGG-UGCg -3'
miRNA:   3'- cCG-UCCUgAGCGUCUG---CUCGCCgGCG- -5'
132 3' -59.9 AC_000006.1 + 30605 0.66 0.359833
Target:  5'- cGCAGGA---GCAGugGAuGCaGCCGUu -3'
miRNA:   3'- cCGUCCUgagCGUCugCU-CGcCGGCG- -5'
132 3' -59.9 AC_000006.1 + 5315 0.66 0.351399
Target:  5'- aGGCGGGACagaggagggaUUGCAGGgcguaGAGCuuGGgCGCa -3'
miRNA:   3'- -CCGUCCUG----------AGCGUCUg----CUCG--CCgGCG- -5'
132 3' -59.9 AC_000006.1 + 13107 0.66 0.351399
Target:  5'- uGCcGGGCUCugugaacagcgGCAGgguGAGcCGGCCGCg -3'
miRNA:   3'- cCGuCCUGAG-----------CGUCug-CUC-GCCGGCG- -5'
132 3' -59.9 AC_000006.1 + 15584 0.66 0.343105
Target:  5'- uGGCcGcGGCg-GCGG-CG-GCGGCCGCu -3'
miRNA:   3'- -CCGuC-CUGagCGUCuGCuCGCCGGCG- -5'
132 3' -59.9 AC_000006.1 + 9654 0.67 0.338197
Target:  5'- aGGCGGaGuCUuccaUGCGGGugaccccgacgccccUGAGCGGCUGCa -3'
miRNA:   3'- -CCGUC-CuGA----GCGUCU---------------GCUCGCCGGCG- -5'
132 3' -59.9 AC_000006.1 + 8077 0.67 0.303775
Target:  5'- cGGCgGGGGCggagagCGaAGACGAG-GGCgCGCa -3'
miRNA:   3'- -CCG-UCCUGa-----GCgUCUGCUCgCCG-GCG- -5'
132 3' -59.9 AC_000006.1 + 16770 0.67 0.296338
Target:  5'- cGCAGGAgaggcaUgGCAGGC-AGCGGCCu- -3'
miRNA:   3'- cCGUCCUg-----AgCGUCUGcUCGCCGGcg -5'
132 3' -59.9 AC_000006.1 + 10244 0.68 0.289042
Target:  5'- uGGC-GGAa-CGCAaACGGGUuaGGCCGCg -3'
miRNA:   3'- -CCGuCCUgaGCGUcUGCUCG--CCGGCG- -5'
132 3' -59.9 AC_000006.1 + 23156 0.68 0.286881
Target:  5'- gGGUuGGGCUCGCAGgugccguugggcugGCGuugGGgGGCaCGCg -3'
miRNA:   3'- -CCGuCCUGAGCGUC--------------UGC---UCgCCG-GCG- -5'
132 3' -59.9 AC_000006.1 + 24313 0.68 0.274876
Target:  5'- --gAGGACgugaGCGG-CGAGgGGCUGCu -3'
miRNA:   3'- ccgUCCUGag--CGUCuGCUCgCCGGCG- -5'
132 3' -59.9 AC_000006.1 + 13778 0.68 0.274183
Target:  5'- aGGCua-GCaCGCAgacgauaaauuuuGACGAGCGGUCGCg -3'
miRNA:   3'- -CCGuccUGaGCGU-------------CUGCUCGCCGGCG- -5'
132 3' -59.9 AC_000006.1 + 5399 0.69 0.241899
Target:  5'- gGGCGcagacGGuCUCGCAcucGACGAGCcaggugagcucgGGCUGCu -3'
miRNA:   3'- -CCGU-----CCuGAGCGU---CUGCUCG------------CCGGCG- -5'
132 3' -59.9 AC_000006.1 + 10096 0.69 0.223737
Target:  5'- cGCGGGaACUCGCGGAC--GCGGUuccagauguugCGCa -3'
miRNA:   3'- cCGUCC-UGAGCGUCUGcuCGCCG-----------GCG- -5'
132 3' -59.9 AC_000006.1 + 16639 0.7 0.205112
Target:  5'- gGGCGGGGg--GCAGACGGcggcggguggcgguGCGGCgGCg -3'
miRNA:   3'- -CCGUCCUgagCGUCUGCU--------------CGCCGgCG- -5'
132 3' -59.9 AC_000006.1 + 15541 0.7 0.196051
Target:  5'- uGCGGGGggUGCAGugGcggcGCGGCgCGCg -3'
miRNA:   3'- cCGUCCUgaGCGUCugCu---CGCCG-GCG- -5'
132 3' -59.9 AC_000006.1 + 10392 0.7 0.185841
Target:  5'- cGGCcganGGGAgUCGCuAGACuugaaAGCGGCCGa -3'
miRNA:   3'- -CCG----UCCUgAGCG-UCUGc----UCGCCGGCg -5'
132 3' -59.9 AC_000006.1 + 10489 0.7 0.185841
Target:  5'- cGGCAGaACccgguUCGCGGACGGccGCGGCgaGCg -3'
miRNA:   3'- -CCGUCcUG-----AGCGUCUGCU--CGCCGg-CG- -5'
132 3' -59.9 AC_000006.1 + 17644 0.71 0.15798
Target:  5'- gGGCGGGGa-CGCGG-CGcacGGCGGUCGCc -3'
miRNA:   3'- -CCGUCCUgaGCGUCuGC---UCGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.