miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
132 5' -55 AC_000006.1 + 15541 1.1 0.000466
Target:  5'- gCCGCGGCCAUCUCUAGCAUGACCAGAc -3'
miRNA:   3'- -GGCGCCGGUAGAGAUCGUACUGGUCU- -5'
132 5' -55 AC_000006.1 + 7544 0.7 0.363852
Target:  5'- cCCaCGGCCAUCUUUucgGGUGUGACgCAGu -3'
miRNA:   3'- -GGcGCCGGUAGAGA---UCGUACUG-GUCu -5'
132 5' -55 AC_000006.1 + 6215 0.68 0.481061
Target:  5'- gCCGCGGUUAUg-C-AGgGUGACCAGGu -3'
miRNA:   3'- -GGCGCCGGUAgaGaUCgUACUGGUCU- -5'
132 5' -55 AC_000006.1 + 9982 0.67 0.546134
Target:  5'- -aGCGGCCAgcgCUGG-GUGGCCGGc -3'
miRNA:   3'- ggCGCCGGUagaGAUCgUACUGGUCu -5'
132 5' -55 AC_000006.1 + 10553 0.66 0.613762
Target:  5'- gCCGCGGCCGUCc---GCGa-ACCGGGu -3'
miRNA:   3'- -GGCGCCGGUAGagauCGUacUGGUCU- -5'
132 5' -55 AC_000006.1 + 18095 0.68 0.485288
Target:  5'- gUGCuGGCCAUgUCUAGCacccgguugucgcccAcGGCCAGAg -3'
miRNA:   3'- gGCG-CCGGUAgAGAUCG---------------UaCUGGUCU- -5'
132 5' -55 AC_000006.1 + 1809 0.68 0.460204
Target:  5'- -gGUGGCCGagauUCagagaaUCUAGCA-GGCCAGAg -3'
miRNA:   3'- ggCGCCGGU----AG------AGAUCGUaCUGGUCU- -5'
132 5' -55 AC_000006.1 + 4770 0.69 0.410274
Target:  5'- aUCGgGGUCAUCUacGGCccGACCGGGu -3'
miRNA:   3'- -GGCgCCGGUAGAgaUCGuaCUGGUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.