miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13201 3' -53.2 NC_003401.1 + 129259 0.66 0.973153
Target:  5'- -gGCGCGUg-GCUGG--GUGACAGCUg -3'
miRNA:   3'- gaUGCGCAagCGACUggCGCUGUUGG- -5'
13201 3' -53.2 NC_003401.1 + 40330 0.66 0.973153
Target:  5'- aUugGCGUaagaCGCcgGACCG-GACAugCc -3'
miRNA:   3'- gAugCGCAa---GCGa-CUGGCgCUGUugG- -5'
13201 3' -53.2 NC_003401.1 + 39221 0.66 0.96398
Target:  5'- -gGgGCGUUCGCUGccACCGUaGCAGg- -3'
miRNA:   3'- gaUgCGCAAGCGAC--UGGCGcUGUUgg -5'
13201 3' -53.2 NC_003401.1 + 14875 0.66 0.960487
Target:  5'- gUGCGCGcgCGCcacgccCCGCcuGGCGGCCa -3'
miRNA:   3'- gAUGCGCaaGCGacu---GGCG--CUGUUGG- -5'
13201 3' -53.2 NC_003401.1 + 19343 0.66 0.960487
Target:  5'- gUACGUGggC-CUGACCGUGuGCAuCCc -3'
miRNA:   3'- gAUGCGCaaGcGACUGGCGC-UGUuGG- -5'
13201 3' -53.2 NC_003401.1 + 27705 0.66 0.960487
Target:  5'- -cGCGCGggccccggUGgaGGCCaGCGcACAGCCg -3'
miRNA:   3'- gaUGCGCaa------GCgaCUGG-CGC-UGUUGG- -5'
13201 3' -53.2 NC_003401.1 + 27978 0.66 0.960487
Target:  5'- cCUACGCGUcugCGCcGuACCuaGCGuacCAGCCg -3'
miRNA:   3'- -GAUGCGCAa--GCGaC-UGG--CGCu--GUUGG- -5'
13201 3' -53.2 NC_003401.1 + 58265 0.66 0.960125
Target:  5'- uUACGCcuccacaGUUUGUcgUGACaaaGCGugGACCa -3'
miRNA:   3'- gAUGCG-------CAAGCG--ACUGg--CGCugUUGG- -5'
13201 3' -53.2 NC_003401.1 + 111358 0.67 0.952814
Target:  5'- uCUAUGCGagUGuCUGGCCGC-ACAcCCg -3'
miRNA:   3'- -GAUGCGCaaGC-GACUGGCGcUGUuGG- -5'
13201 3' -53.2 NC_003401.1 + 59108 0.67 0.944197
Target:  5'- -cACGUuUUUuCUGACCGCGuGCAGCUg -3'
miRNA:   3'- gaUGCGcAAGcGACUGGCGC-UGUUGG- -5'
13201 3' -53.2 NC_003401.1 + 16670 0.67 0.939527
Target:  5'- -gGCGCGgcUGUUGugCaaGCGGCcGCCg -3'
miRNA:   3'- gaUGCGCaaGCGACugG--CGCUGuUGG- -5'
13201 3' -53.2 NC_003401.1 + 88140 0.68 0.934613
Target:  5'- uCUGCGCGUguuuUCGCucgcccaauaucUGAgUGCGGuguCAGCCa -3'
miRNA:   3'- -GAUGCGCA----AGCG------------ACUgGCGCU---GUUGG- -5'
13201 3' -53.2 NC_003401.1 + 10854 0.68 0.929452
Target:  5'- aCUGUGCGUcuuugaugacgUCGCUuGCCGCGGuuGCCg -3'
miRNA:   3'- -GAUGCGCA-----------AGCGAcUGGCGCUguUGG- -5'
13201 3' -53.2 NC_003401.1 + 19592 0.68 0.929452
Target:  5'- -cGCGCcgcgGUUCGgUGGCCcggcgaaacuGCGGCAGCUc -3'
miRNA:   3'- gaUGCG----CAAGCgACUGG----------CGCUGUUGG- -5'
13201 3' -53.2 NC_003401.1 + 20104 0.68 0.929452
Target:  5'- --cCGCGga-GCcaaUGGCCGCGGCGuCCg -3'
miRNA:   3'- gauGCGCaagCG---ACUGGCGCUGUuGG- -5'
13201 3' -53.2 NC_003401.1 + 72478 0.68 0.924046
Target:  5'- -cGCGCGUcacgGCcuUGGCCGUGGCcGCCc -3'
miRNA:   3'- gaUGCGCAag--CG--ACUGGCGCUGuUGG- -5'
13201 3' -53.2 NC_003401.1 + 128950 0.68 0.924046
Target:  5'- -aACGCacgaacccUCGCUgGGCCGCuGCAGCCc -3'
miRNA:   3'- gaUGCGca------AGCGA-CUGGCGcUGUUGG- -5'
13201 3' -53.2 NC_003401.1 + 11139 0.68 0.918392
Target:  5'- uCUACGUGUUCGC-GACUGaGGCG-CUg -3'
miRNA:   3'- -GAUGCGCAAGCGaCUGGCgCUGUuGG- -5'
13201 3' -53.2 NC_003401.1 + 78058 0.68 0.918392
Target:  5'- gUAUGUG--CGUcGACCGCGGcCAGCCa -3'
miRNA:   3'- gAUGCGCaaGCGaCUGGCGCU-GUUGG- -5'
13201 3' -53.2 NC_003401.1 + 82379 0.68 0.918392
Target:  5'- -cACGCGUUgGCgcacgacagGACCGCaACcGCCc -3'
miRNA:   3'- gaUGCGCAAgCGa--------CUGGCGcUGuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.