miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13201 3' -53.2 NC_003401.1 + 58265 0.66 0.960125
Target:  5'- uUACGCcuccacaGUUUGUcgUGACaaaGCGugGACCa -3'
miRNA:   3'- gAUGCG-------CAAGCG--ACUGg--CGCugUUGG- -5'
13201 3' -53.2 NC_003401.1 + 21627 0.68 0.906351
Target:  5'- -cACGCGca-GCggacGGCCGCGGC-ACCu -3'
miRNA:   3'- gaUGCGCaagCGa---CUGGCGCUGuUGG- -5'
13201 3' -53.2 NC_003401.1 + 90574 0.68 0.906351
Target:  5'- uUAUGCGUUC-CUGGCCccaagacguGCGugAGCg -3'
miRNA:   3'- gAUGCGCAAGcGACUGG---------CGCugUUGg -5'
13201 3' -53.2 NC_003401.1 + 82379 0.68 0.918392
Target:  5'- -cACGCGUUgGCgcacgacagGACCGCaACcGCCc -3'
miRNA:   3'- gaUGCGCAAgCGa--------CUGGCGcUGuUGG- -5'
13201 3' -53.2 NC_003401.1 + 72478 0.68 0.924046
Target:  5'- -cGCGCGUcacgGCcuUGGCCGUGGCcGCCc -3'
miRNA:   3'- gaUGCGCAag--CG--ACUGGCGCUGuUGG- -5'
13201 3' -53.2 NC_003401.1 + 20104 0.68 0.929452
Target:  5'- --cCGCGga-GCcaaUGGCCGCGGCGuCCg -3'
miRNA:   3'- gauGCGCaagCG---ACUGGCGCUGUuGG- -5'
13201 3' -53.2 NC_003401.1 + 19592 0.68 0.929452
Target:  5'- -cGCGCcgcgGUUCGgUGGCCcggcgaaacuGCGGCAGCUc -3'
miRNA:   3'- gaUGCG----CAAGCgACUGG----------CGCUGUUGG- -5'
13201 3' -53.2 NC_003401.1 + 16670 0.67 0.939527
Target:  5'- -gGCGCGgcUGUUGugCaaGCGGCcGCCg -3'
miRNA:   3'- gaUGCGCaaGCGACugG--CGCUGuUGG- -5'
13201 3' -53.2 NC_003401.1 + 111358 0.67 0.952814
Target:  5'- uCUAUGCGagUGuCUGGCCGC-ACAcCCg -3'
miRNA:   3'- -GAUGCGCaaGC-GACUGGCGcUGUuGG- -5'
13201 3' -53.2 NC_003401.1 + 48130 0.69 0.899966
Target:  5'- gCUACGCGaccCGUgu-CCGCGuGCAACCc -3'
miRNA:   3'- -GAUGCGCaa-GCGacuGGCGC-UGUUGG- -5'
13201 3' -53.2 NC_003401.1 + 45547 0.7 0.859904
Target:  5'- -gGCGCGUuguugccgauucgugUCGC-GAcCCGCGuCAACCc -3'
miRNA:   3'- gaUGCGCA---------------AGCGaCU-GGCGCuGUUGG- -5'
13201 3' -53.2 NC_003401.1 + 32954 0.7 0.856777
Target:  5'- aUACGCGUgucagagcaaguuugCGCU-ACCguuucguGCGACAGCCg -3'
miRNA:   3'- gAUGCGCAa--------------GCGAcUGG-------CGCUGUUGG- -5'
13201 3' -53.2 NC_003401.1 + 117826 0.76 0.554971
Target:  5'- ---gGCGgcaacauuaUUCGCUGACCGCcgGACGACCc -3'
miRNA:   3'- gaugCGC---------AAGCGACUGGCG--CUGUUGG- -5'
13201 3' -53.2 NC_003401.1 + 111063 0.75 0.575426
Target:  5'- uUGCGUGUUguucCGUUGGCCGCGGaagucacacCAACCg -3'
miRNA:   3'- gAUGCGCAA----GCGACUGGCGCU---------GUUGG- -5'
13201 3' -53.2 NC_003401.1 + 50568 0.75 0.606401
Target:  5'- cCUugGCGUUUGCcauuugGACC-CGACAACa -3'
miRNA:   3'- -GAugCGCAAGCGa-----CUGGcGCUGUUGg -5'
13201 3' -53.2 NC_003401.1 + 16930 0.74 0.636514
Target:  5'- cCUACGUGUUCGUUGACgCGCccgggucccuaaaGuCGACCu -3'
miRNA:   3'- -GAUGCGCAAGCGACUG-GCG-------------CuGUUGG- -5'
13201 3' -53.2 NC_003401.1 + 132231 0.72 0.759334
Target:  5'- -gGCGCcgcCGCcgGGCCGCGGCcGCCa -3'
miRNA:   3'- gaUGCGcaaGCGa-CUGGCGCUGuUGG- -5'
13201 3' -53.2 NC_003401.1 + 77893 0.72 0.768957
Target:  5'- -gACGCaaUgGCUGGCCGCGGuCGACg -3'
miRNA:   3'- gaUGCGcaAgCGACUGGCGCU-GUUGg -5'
13201 3' -53.2 NC_003401.1 + 81785 0.71 0.814999
Target:  5'- --cCGCGguacUCGCccgauucGACCGCGGCAACg -3'
miRNA:   3'- gauGCGCa---AGCGa------CUGGCGCUGUUGg -5'
13201 3' -53.2 NC_003401.1 + 18957 0.7 0.840644
Target:  5'- --cCGCGUccgaucgCGCUGACagaCGCGuGCAGCCa -3'
miRNA:   3'- gauGCGCAa------GCGACUG---GCGC-UGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.