miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13202 5' -59.4 NC_003401.1 + 14366 0.66 0.743951
Target:  5'- gACCGcaaGCCCGUCgCCCCGGAccccCAAg -3'
miRNA:   3'- -UGGCac-UGGGCGG-GGGGCCUuu--GUUa -5'
13202 5' -59.4 NC_003401.1 + 132814 0.66 0.743951
Target:  5'- cCCG-GGCCCcgGCCCCCCucccggcggcgcGGAGACc-- -3'
miRNA:   3'- uGGCaCUGGG--CGGGGGG------------CCUUUGuua -5'
13202 5' -59.4 NC_003401.1 + 132576 0.66 0.743951
Target:  5'- uGCCG-GGCggCCGCCgCCCGGcauGGCGGUc -3'
miRNA:   3'- -UGGCaCUG--GGCGGgGGGCCu--UUGUUA- -5'
13202 5' -59.4 NC_003401.1 + 22489 0.66 0.734298
Target:  5'- aGCUGUGugCCaa-UCCCGGGGACGAc -3'
miRNA:   3'- -UGGCACugGGcggGGGGCCUUUGUUa -5'
13202 5' -59.4 NC_003401.1 + 120983 0.66 0.734298
Target:  5'- gGCCGUcaaaaaGGCCCGUCgCCggUGGGAACGAc -3'
miRNA:   3'- -UGGCA------CUGGGCGGgGG--GCCUUUGUUa -5'
13202 5' -59.4 NC_003401.1 + 121956 0.66 0.714741
Target:  5'- gGCCGUG-CCaCGCCCCCUGcc-GCGc- -3'
miRNA:   3'- -UGGCACuGG-GCGGGGGGCcuuUGUua -5'
13202 5' -59.4 NC_003401.1 + 75762 0.66 0.704855
Target:  5'- aACCGU-ACCCGCUCCUcucccggaCGGAuACGAa -3'
miRNA:   3'- -UGGCAcUGGGCGGGGG--------GCCUuUGUUa -5'
13202 5' -59.4 NC_003401.1 + 132347 0.67 0.694908
Target:  5'- cGCCGgcccgGGCCCGCggccgccgCCCCCGGccGCc-- -3'
miRNA:   3'- -UGGCa----CUGGGCG--------GGGGGCCuuUGuua -5'
13202 5' -59.4 NC_003401.1 + 132516 0.67 0.694908
Target:  5'- cGCCGcGcCCCgacGCCCCCCGGGccCGGg -3'
miRNA:   3'- -UGGCaCuGGG---CGGGGGGCCUuuGUUa -5'
13202 5' -59.4 NC_003401.1 + 9323 0.67 0.68491
Target:  5'- cACCGcuuCCUgucaGCCCCCCGaGGAACAGc -3'
miRNA:   3'- -UGGCacuGGG----CGGGGGGC-CUUUGUUa -5'
13202 5' -59.4 NC_003401.1 + 74776 0.67 0.664794
Target:  5'- aGCCaugGGUCUGCCCCCgGGAGugGAUa -3'
miRNA:   3'- -UGGca-CUGGGCGGGGGgCCUUugUUA- -5'
13202 5' -59.4 NC_003401.1 + 58038 0.67 0.664794
Target:  5'- uGCCG-GACUCGCaagagaCCCCaccagGGAAGCAAa -3'
miRNA:   3'- -UGGCaCUGGGCGg-----GGGG-----CCUUUGUUa -5'
13202 5' -59.4 NC_003401.1 + 40180 0.67 0.653682
Target:  5'- uUCGUGACacaCCGCCCCCaccauguCGGAGAgAAc -3'
miRNA:   3'- uGGCACUG---GGCGGGGG-------GCCUUUgUUa -5'
13202 5' -59.4 NC_003401.1 + 43151 0.68 0.634446
Target:  5'- -aCGcGGCCCGCCUCaCGGGAACGc- -3'
miRNA:   3'- ugGCaCUGGGCGGGGgGCCUUUGUua -5'
13202 5' -59.4 NC_003401.1 + 132588 0.68 0.634446
Target:  5'- cCCGggggcGGCCCcgGCCCCCCGcGGGACc-- -3'
miRNA:   3'- uGGCa----CUGGG--CGGGGGGC-CUUUGuua -5'
13202 5' -59.4 NC_003401.1 + 14417 0.68 0.621278
Target:  5'- gAUCGUGaccgggaucaucccGCCUGCCCCUggcguuCGGAGGCAGg -3'
miRNA:   3'- -UGGCAC--------------UGGGCGGGGG------GCCUUUGUUa -5'
13202 5' -59.4 NC_003401.1 + 115057 0.68 0.604082
Target:  5'- cACCGgggGACCUGCaCCCCaccgGGGGACu-- -3'
miRNA:   3'- -UGGCa--CUGGGCG-GGGGg---CCUUUGuua -5'
13202 5' -59.4 NC_003401.1 + 115399 0.68 0.604082
Target:  5'- cACCGgggGACCUGCaCCCCaccgGGGGACu-- -3'
miRNA:   3'- -UGGCa--CUGGGCG-GGGGg---CCUUUGuua -5'
13202 5' -59.4 NC_003401.1 + 118178 0.68 0.583928
Target:  5'- --aGUGACCCGCgggcgaCCCCGGcgGCGGc -3'
miRNA:   3'- uggCACUGGGCGg-----GGGGCCuuUGUUa -5'
13202 5' -59.4 NC_003401.1 + 22674 0.69 0.52448
Target:  5'- cCCG-GGCCCGCCUCgaCGGAAACc-- -3'
miRNA:   3'- uGGCaCUGGGCGGGGg-GCCUUUGuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.