Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13202 | 5' | -59.4 | NC_003401.1 | + | 14366 | 0.66 | 0.743951 |
Target: 5'- gACCGcaaGCCCGUCgCCCCGGAccccCAAg -3' miRNA: 3'- -UGGCac-UGGGCGG-GGGGCCUuu--GUUa -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 132814 | 0.66 | 0.743951 |
Target: 5'- cCCG-GGCCCcgGCCCCCCucccggcggcgcGGAGACc-- -3' miRNA: 3'- uGGCaCUGGG--CGGGGGG------------CCUUUGuua -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 132576 | 0.66 | 0.743951 |
Target: 5'- uGCCG-GGCggCCGCCgCCCGGcauGGCGGUc -3' miRNA: 3'- -UGGCaCUG--GGCGGgGGGCCu--UUGUUA- -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 22489 | 0.66 | 0.734298 |
Target: 5'- aGCUGUGugCCaa-UCCCGGGGACGAc -3' miRNA: 3'- -UGGCACugGGcggGGGGCCUUUGUUa -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 120983 | 0.66 | 0.734298 |
Target: 5'- gGCCGUcaaaaaGGCCCGUCgCCggUGGGAACGAc -3' miRNA: 3'- -UGGCA------CUGGGCGGgGG--GCCUUUGUUa -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 121956 | 0.66 | 0.714741 |
Target: 5'- gGCCGUG-CCaCGCCCCCUGcc-GCGc- -3' miRNA: 3'- -UGGCACuGG-GCGGGGGGCcuuUGUua -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 75762 | 0.66 | 0.704855 |
Target: 5'- aACCGU-ACCCGCUCCUcucccggaCGGAuACGAa -3' miRNA: 3'- -UGGCAcUGGGCGGGGG--------GCCUuUGUUa -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 132347 | 0.67 | 0.694908 |
Target: 5'- cGCCGgcccgGGCCCGCggccgccgCCCCCGGccGCc-- -3' miRNA: 3'- -UGGCa----CUGGGCG--------GGGGGCCuuUGuua -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 132516 | 0.67 | 0.694908 |
Target: 5'- cGCCGcGcCCCgacGCCCCCCGGGccCGGg -3' miRNA: 3'- -UGGCaCuGGG---CGGGGGGCCUuuGUUa -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 9323 | 0.67 | 0.68491 |
Target: 5'- cACCGcuuCCUgucaGCCCCCCGaGGAACAGc -3' miRNA: 3'- -UGGCacuGGG----CGGGGGGC-CUUUGUUa -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 74776 | 0.67 | 0.664794 |
Target: 5'- aGCCaugGGUCUGCCCCCgGGAGugGAUa -3' miRNA: 3'- -UGGca-CUGGGCGGGGGgCCUUugUUA- -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 58038 | 0.67 | 0.664794 |
Target: 5'- uGCCG-GACUCGCaagagaCCCCaccagGGAAGCAAa -3' miRNA: 3'- -UGGCaCUGGGCGg-----GGGG-----CCUUUGUUa -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 40180 | 0.67 | 0.653682 |
Target: 5'- uUCGUGACacaCCGCCCCCaccauguCGGAGAgAAc -3' miRNA: 3'- uGGCACUG---GGCGGGGG-------GCCUUUgUUa -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 43151 | 0.68 | 0.634446 |
Target: 5'- -aCGcGGCCCGCCUCaCGGGAACGc- -3' miRNA: 3'- ugGCaCUGGGCGGGGgGCCUUUGUua -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 132588 | 0.68 | 0.634446 |
Target: 5'- cCCGggggcGGCCCcgGCCCCCCGcGGGACc-- -3' miRNA: 3'- uGGCa----CUGGG--CGGGGGGC-CUUUGuua -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 14417 | 0.68 | 0.621278 |
Target: 5'- gAUCGUGaccgggaucaucccGCCUGCCCCUggcguuCGGAGGCAGg -3' miRNA: 3'- -UGGCAC--------------UGGGCGGGGG------GCCUUUGUUa -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 115057 | 0.68 | 0.604082 |
Target: 5'- cACCGgggGACCUGCaCCCCaccgGGGGACu-- -3' miRNA: 3'- -UGGCa--CUGGGCG-GGGGg---CCUUUGuua -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 115399 | 0.68 | 0.604082 |
Target: 5'- cACCGgggGACCUGCaCCCCaccgGGGGACu-- -3' miRNA: 3'- -UGGCa--CUGGGCG-GGGGg---CCUUUGuua -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 118178 | 0.68 | 0.583928 |
Target: 5'- --aGUGACCCGCgggcgaCCCCGGcgGCGGc -3' miRNA: 3'- uggCACUGGGCGg-----GGGGCCuuUGUUa -5' |
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13202 | 5' | -59.4 | NC_003401.1 | + | 22674 | 0.69 | 0.52448 |
Target: 5'- cCCG-GGCCCGCCUCgaCGGAAACc-- -3' miRNA: 3'- uGGCaCUGGGCGGGGg-GCCUUUGuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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