miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13204 3' -61.7 NC_003401.1 + 118726 0.78 0.123892
Target:  5'- cGGCCGCGCCgCuUGGcGGCGCGGcUUCCUc -3'
miRNA:   3'- cCCGGCGCGG-G-ACC-UUGCGCC-AAGGA- -5'
13204 3' -61.7 NC_003401.1 + 119630 0.67 0.55116
Target:  5'- cGGGCUGUGCCCcucaacUGGAgaACcCGGUauUCCc -3'
miRNA:   3'- -CCCGGCGCGGG------ACCU--UGcGCCA--AGGa -5'
13204 3' -61.7 NC_003401.1 + 122574 0.68 0.530983
Target:  5'- cGGCCGCGCgCUgcgcggcGGAAcagacuuucCGCGGUUCg- -3'
miRNA:   3'- cCCGGCGCGgGA-------CCUU---------GCGCCAAGga -5'
13204 3' -61.7 NC_003401.1 + 125702 0.73 0.274695
Target:  5'- cGGCCaucaGCGCCCUGGGAaGCGGggcaCCg -3'
miRNA:   3'- cCCGG----CGCGGGACCUUgCGCCaa--GGa -5'
13204 3' -61.7 NC_003401.1 + 127706 0.67 0.60002
Target:  5'- cGGCCaccugggaGCCCUGGucuCGCGGggcggCCUg -3'
miRNA:   3'- cCCGGcg------CGGGACCuu-GCGCCaa---GGA- -5'
13204 3' -61.7 NC_003401.1 + 132242 0.67 0.597065
Target:  5'- cGGGCCgcggccgccaucuuGCGCCC-GGGGCGaGGgUCCc -3'
miRNA:   3'- -CCCGG--------------CGCGGGaCCUUGCgCCaAGGa -5'
13204 3' -61.7 NC_003401.1 + 132451 0.73 0.281015
Target:  5'- cGGCgGCGCCC-GGcGCGCGGgcCCg -3'
miRNA:   3'- cCCGgCGCGGGaCCuUGCGCCaaGGa -5'
13204 3' -61.7 NC_003401.1 + 132583 0.73 0.25642
Target:  5'- cGGCCGcCGCCC-GGcAugGCGGUccUCCg -3'
miRNA:   3'- cCCGGC-GCGGGaCC-UugCGCCA--AGGa -5'
13204 3' -61.7 NC_003401.1 + 132611 0.66 0.639538
Target:  5'- cGGCCGgGCCCggcGGAGCggcacccggggGCGGccCCg -3'
miRNA:   3'- cCCGGCgCGGGa--CCUUG-----------CGCCaaGGa -5'
13204 3' -61.7 NC_003401.1 + 132667 0.66 0.639538
Target:  5'- gGGGCCgGgGCCC-GGGGCgccucgGCGGggCCc -3'
miRNA:   3'- -CCCGG-CgCGGGaCCUUG------CGCCaaGGa -5'
13204 3' -61.7 NC_003401.1 + 132683 0.7 0.397838
Target:  5'- gGGGCCccGgGCCCggggggcgucGGGGCGCGGcgCCg -3'
miRNA:   3'- -CCCGG--CgCGGGa---------CCUUGCGCCaaGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.