miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13204 3' -61.7 NC_003401.1 + 20614 1.08 0.00094
Target:  5'- gGGGCCGCGCCCUGGAACGCGGUUCCUu -3'
miRNA:   3'- -CCCGGCGCGGGACCUUGCGCCAAGGA- -5'
13204 3' -61.7 NC_003401.1 + 118726 0.78 0.123892
Target:  5'- cGGCCGCGCCgCuUGGcGGCGCGGcUUCCUc -3'
miRNA:   3'- cCCGGCGCGG-G-ACC-UUGCGCC-AAGGA- -5'
13204 3' -61.7 NC_003401.1 + 20284 0.74 0.239153
Target:  5'- uGGacgaCGCGCCCgGGGACGCGGacgCCg -3'
miRNA:   3'- cCCg---GCGCGGGaCCUUGCGCCaa-GGa -5'
13204 3' -61.7 NC_003401.1 + 132583 0.73 0.25642
Target:  5'- cGGCCGcCGCCC-GGcAugGCGGUccUCCg -3'
miRNA:   3'- cCCGGC-GCGGGaCC-UugCGCCA--AGGa -5'
13204 3' -61.7 NC_003401.1 + 125702 0.73 0.274695
Target:  5'- cGGCCaucaGCGCCCUGGGAaGCGGggcaCCg -3'
miRNA:   3'- cCCGG----CGCGGGACCUUgCGCCaa--GGa -5'
13204 3' -61.7 NC_003401.1 + 132451 0.73 0.281015
Target:  5'- cGGCgGCGCCC-GGcGCGCGGgcCCg -3'
miRNA:   3'- cCCGgCGCGGGaCCuUGCGCCaaGGa -5'
13204 3' -61.7 NC_003401.1 + 107792 0.72 0.293999
Target:  5'- uGGGCCccGCGCCC-GGuGGCGCGGacCCg -3'
miRNA:   3'- -CCCGG--CGCGGGaCC-UUGCGCCaaGGa -5'
13204 3' -61.7 NC_003401.1 + 72717 0.71 0.343098
Target:  5'- gGGGCgCGCGUCUUGGGACGCGuGg---- -3'
miRNA:   3'- -CCCG-GCGCGGGACCUUGCGC-Caagga -5'
13204 3' -61.7 NC_003401.1 + 109110 0.71 0.358171
Target:  5'- cGGCCGUuCCCaGGAGCGCGuGgUCCa -3'
miRNA:   3'- cCCGGCGcGGGaCCUUGCGC-CaAGGa -5'
13204 3' -61.7 NC_003401.1 + 132683 0.7 0.397838
Target:  5'- gGGGCCccGgGCCCggggggcgucGGGGCGCGGcgCCg -3'
miRNA:   3'- -CCCGG--CgCGGGa---------CCUUGCGCCaaGGa -5'
13204 3' -61.7 NC_003401.1 + 43997 0.7 0.397838
Target:  5'- uGGGUCGCaacuacGCCCUGGA-CGUGGacCCc -3'
miRNA:   3'- -CCCGGCG------CGGGACCUuGCGCCaaGGa -5'
13204 3' -61.7 NC_003401.1 + 74896 0.69 0.46684
Target:  5'- uGGCCGCGCCUgguucguuuUGGAcguguUGCGGguuuagUCCg -3'
miRNA:   3'- cCCGGCGCGGG---------ACCUu----GCGCCa-----AGGa -5'
13204 3' -61.7 NC_003401.1 + 18304 0.69 0.475899
Target:  5'- -cGCCGCGCCCUGcccCGUGGUgcgauuaagcUCCg -3'
miRNA:   3'- ccCGGCGCGGGACcuuGCGCCA----------AGGa -5'
13204 3' -61.7 NC_003401.1 + 40439 0.68 0.503581
Target:  5'- uGGGCUGCGCgUUGGGACGg---UCCa -3'
miRNA:   3'- -CCCGGCGCGgGACCUUGCgccaAGGa -5'
13204 3' -61.7 NC_003401.1 + 122574 0.68 0.530983
Target:  5'- cGGCCGCGCgCUgcgcggcGGAAcagacuuucCGCGGUUCg- -3'
miRNA:   3'- cCCGGCGCGgGA-------CCUU---------GCGCCAAGga -5'
13204 3' -61.7 NC_003401.1 + 119630 0.67 0.55116
Target:  5'- cGGGCUGUGCCCcucaacUGGAgaACcCGGUauUCCc -3'
miRNA:   3'- -CCCGGCGCGGG------ACCU--UGcGCCA--AGGa -5'
13204 3' -61.7 NC_003401.1 + 107631 0.67 0.55116
Target:  5'- cGGGuCCGcCGCCaccGGGCGCGGggCCc -3'
miRNA:   3'- -CCC-GGC-GCGGgacCUUGCGCCaaGGa -5'
13204 3' -61.7 NC_003401.1 + 19634 0.67 0.560851
Target:  5'- cGGCCaccgaucgcGCGCCCUGGAGCugccggGCGGggUg- -3'
miRNA:   3'- cCCGG---------CGCGGGACCUUG------CGCCaaGga -5'
13204 3' -61.7 NC_003401.1 + 50035 0.67 0.580366
Target:  5'- cGGCCGcCGUCCgGGGcucgcguacACGaUGGUUCCg -3'
miRNA:   3'- cCCGGC-GCGGGaCCU---------UGC-GCCAAGGa -5'
13204 3' -61.7 NC_003401.1 + 132242 0.67 0.597065
Target:  5'- cGGGCCgcggccgccaucuuGCGCCC-GGGGCGaGGgUCCc -3'
miRNA:   3'- -CCCGG--------------CGCGGGaCCUUGCgCCaAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.