miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13204 5' -48.1 NC_003401.1 + 72986 0.69 0.987156
Target:  5'- gAGGGAGCCGCGgagggguuuguagUCACAGGAGGcGuGCc -3'
miRNA:   3'- gUUUCUUGGCGC-------------AGUGUUUUUC-C-CGa -5'
13204 5' -48.1 NC_003401.1 + 108714 0.69 0.985584
Target:  5'- aGAAGucCCGCGUC-CGA--AGGGCc -3'
miRNA:   3'- gUUUCuuGGCGCAGuGUUuuUCCCGa -5'
13204 5' -48.1 NC_003401.1 + 12504 0.7 0.974044
Target:  5'- gCGAAGAcCCGCGUUuCGGugguGGGCUg -3'
miRNA:   3'- -GUUUCUuGGCGCAGuGUUuuu-CCCGA- -5'
13204 5' -48.1 NC_003401.1 + 22438 0.71 0.967923
Target:  5'- ---uGGACaaGCGUCcCAAAAAGGGCa -3'
miRNA:   3'- guuuCUUGg-CGCAGuGUUUUUCCCGa -5'
13204 5' -48.1 NC_003401.1 + 18635 0.71 0.967923
Target:  5'- --cAGAGCUguGCGUCACGGAGAGGuCUc -3'
miRNA:   3'- guuUCUUGG--CGCAGUGUUUUUCCcGA- -5'
13204 5' -48.1 NC_003401.1 + 95274 0.71 0.960844
Target:  5'- -cAGGAGCgGUGUCACAAccuguuucAGGGCg -3'
miRNA:   3'- guUUCUUGgCGCAGUGUUuu------UCCCGa -5'
13204 5' -48.1 NC_003401.1 + 77843 0.71 0.960844
Target:  5'- --cGGAACCGUGgCACA---GGGGCg -3'
miRNA:   3'- guuUCUUGGCGCaGUGUuuuUCCCGa -5'
13204 5' -48.1 NC_003401.1 + 127526 0.71 0.956521
Target:  5'- aCAAAGAggcgcagGCCGCccCGCGAGAccAGGGCUc -3'
miRNA:   3'- -GUUUCU-------UGGCGcaGUGUUUU--UCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 17651 0.71 0.952751
Target:  5'- -cGAGAACgGCGgcgcgCGCucGGAGGGCa -3'
miRNA:   3'- guUUCUUGgCGCa----GUGuuUUUCCCGa -5'
13204 5' -48.1 NC_003401.1 + 23482 0.72 0.948311
Target:  5'- uCGGGGAGCCGgGU-GCAGGgcGGGGGCg -3'
miRNA:   3'- -GUUUCUUGGCgCAgUGUUU--UUCCCGa -5'
13204 5' -48.1 NC_003401.1 + 85085 0.72 0.948311
Target:  5'- gGGGGAcCCGUGUCGCGcgGGGAGGGg- -3'
miRNA:   3'- gUUUCUuGGCGCAGUGU--UUUUCCCga -5'
13204 5' -48.1 NC_003401.1 + 28060 0.74 0.865917
Target:  5'- ---cGAGCCGCGUCGCAGAccuccGGCg -3'
miRNA:   3'- guuuCUUGGCGCAGUGUUUuuc--CCGa -5'
13204 5' -48.1 NC_003401.1 + 46512 0.75 0.849349
Target:  5'- gUAAAGAGCa-CGUCACAAGAuauacAGGGCg -3'
miRNA:   3'- -GUUUCUUGgcGCAGUGUUUU-----UCCCGa -5'
13204 5' -48.1 NC_003401.1 + 20775 0.75 0.844199
Target:  5'- gAAGGAACCGCGUuccagggcgcggcccCGCGuuGGGGGUUg -3'
miRNA:   3'- gUUUCUUGGCGCA---------------GUGUuuUUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 92855 0.77 0.764646
Target:  5'- aCAAGGGACaCGCGUUugGGGGGcGGGCa -3'
miRNA:   3'- -GUUUCUUG-GCGCAGugUUUUU-CCCGa -5'
13204 5' -48.1 NC_003401.1 + 69741 0.77 0.744053
Target:  5'- -cGGGAugCGCGuUCGCGAGcAGGGCUu -3'
miRNA:   3'- guUUCUugGCGC-AGUGUUUuUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 20648 1.08 0.016264
Target:  5'- gCAAAGAACCGCGUCACAAAAAGGGCUc -3'
miRNA:   3'- -GUUUCUUGGCGCAGUGUUUUUCCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.