miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13205 3' -48.6 NC_003401.1 + 89867 0.67 0.995913
Target:  5'- gGCGGccugcguccAugGGCUUGagCCAGGGACGCc -3'
miRNA:   3'- aUGCCu--------UugCCGAGCa-GGUUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 107234 0.67 0.995198
Target:  5'- cGCGGGuuugauGCGGUUgGUUgGGGGGCGCu -3'
miRNA:   3'- aUGCCUu-----UGCCGAgCAGgUUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 120901 0.67 0.995198
Target:  5'- gACGGGAcugccaGGUgCGUCCGgcAAAACGCg -3'
miRNA:   3'- aUGCCUUug----CCGaGCAGGU--UUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 23581 0.67 0.995198
Target:  5'- gGCGGGGAuuuuucCGGgUCGUUCgGAGGGCACc -3'
miRNA:   3'- aUGCCUUU------GCCgAGCAGG-UUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 28 0.67 0.994384
Target:  5'- gACaGGGGACGGCgugugCGUgCuuguGAGACACc -3'
miRNA:   3'- aUG-CCUUUGCCGa----GCAgGu---UUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 132763 0.67 0.994384
Target:  5'- gACaGGGGACGGCgugugCGUgCuuguGAGACACc -3'
miRNA:   3'- aUG-CCUUUGCCGa----GCAgGu---UUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 14428 0.67 0.993463
Target:  5'- gGCGGGAACGGgaUCGUgaCCGGGAuCAUc -3'
miRNA:   3'- aUGCCUUUGCCg-AGCA--GGUUUUuGUG- -5'
13205 3' -48.6 NC_003401.1 + 77733 0.68 0.992424
Target:  5'- -uUGGGGACaGGUcguccauuUCGUCCGAGGACGa -3'
miRNA:   3'- auGCCUUUG-CCG--------AGCAGGUUUUUGUg -5'
13205 3' -48.6 NC_003401.1 + 119799 0.68 0.992314
Target:  5'- -cCGGAGGCGGCgcagCGgcaCCGAGgcuaaacAGCGCg -3'
miRNA:   3'- auGCCUUUGCCGa---GCa--GGUUU-------UUGUG- -5'
13205 3' -48.6 NC_003401.1 + 16223 0.68 0.991258
Target:  5'- aGCGGAAACcGUgaCGcUCCGGGGGCGCa -3'
miRNA:   3'- aUGCCUUUGcCGa-GC-AGGUUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 43143 0.68 0.991258
Target:  5'- cACGGAAuacGCGGCcCGccUCaCGGGAACGCc -3'
miRNA:   3'- aUGCCUU---UGCCGaGC--AG-GUUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 82308 0.68 0.989955
Target:  5'- -gUGGAAGCGccGCUcCGUCCGGAGAUg- -3'
miRNA:   3'- auGCCUUUGC--CGA-GCAGGUUUUUGug -5'
13205 3' -48.6 NC_003401.1 + 87875 0.68 0.988505
Target:  5'- --gGGAcACGGCUCGccuUCCGgagugGGAACGCc -3'
miRNA:   3'- augCCUuUGCCGAGC---AGGU-----UUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 69435 0.68 0.986897
Target:  5'- gAUGGAAACGGUagcacaGUUgGGAAACGCu -3'
miRNA:   3'- aUGCCUUUGCCGag----CAGgUUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 122558 0.68 0.986897
Target:  5'- gGCGGAAcagacuuuccGCGGUUCG-CCGGcGACAa -3'
miRNA:   3'- aUGCCUU----------UGCCGAGCaGGUUuUUGUg -5'
13205 3' -48.6 NC_003401.1 + 17888 0.69 0.985122
Target:  5'- gACGucuGAGACGcCUCG-CCGGAGACGCg -3'
miRNA:   3'- aUGC---CUUUGCcGAGCaGGUUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 107387 0.69 0.985122
Target:  5'- aGCGG-GGCGGUccaccuggagUCGUCCGguucgggcccguGAGACACa -3'
miRNA:   3'- aUGCCuUUGCCG----------AGCAGGU------------UUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 52158 0.69 0.983169
Target:  5'- gGCGGAcGCGGUUCGcgaccUCAAGGACGa -3'
miRNA:   3'- aUGCCUuUGCCGAGCa----GGUUUUUGUg -5'
13205 3' -48.6 NC_003401.1 + 53347 0.69 0.983169
Target:  5'- gGCGGAuuCGGaggaagCGUCCGccAACGCu -3'
miRNA:   3'- aUGCCUuuGCCga----GCAGGUuuUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 115744 0.69 0.983169
Target:  5'- -gUGGggGCGGCUCGgcUCCGGGGu--- -3'
miRNA:   3'- auGCCuuUGCCGAGC--AGGUUUUugug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.