miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13206 5' -58.8 NC_003401.1 + 13985 0.66 0.750517
Target:  5'- uUCCUgCUGUAGCUGguGCAuGCcGGGa -3'
miRNA:   3'- cAGGA-GGCGUCGACuuCGU-CGuCCCc -5'
13206 5' -58.8 NC_003401.1 + 21011 0.67 0.711283
Target:  5'- cGUCCguuUCCGCGGCUGAAGauuuugagaaAGguGGc- -3'
miRNA:   3'- -CAGG---AGGCGUCGACUUCg---------UCguCCcc -5'
13206 5' -58.8 NC_003401.1 + 69803 0.67 0.68112
Target:  5'- cGUCCUCgCGUGGCUGcuuucucuUAGCGGGGa -3'
miRNA:   3'- -CAGGAG-GCGUCGACuuc-----GUCGUCCCc -5'
13206 5' -58.8 NC_003401.1 + 75663 0.67 0.680107
Target:  5'- -cCCUCCGCAGCUgugucggcgcuuaGAAGCGGauuuuaAGGa- -3'
miRNA:   3'- caGGAGGCGUCGA-------------CUUCGUCg-----UCCcc -5'
13206 5' -58.8 NC_003401.1 + 85411 0.67 0.670973
Target:  5'- aUUUUCUGCAGCac---CAGCAGGGGa -3'
miRNA:   3'- cAGGAGGCGUCGacuucGUCGUCCCC- -5'
13206 5' -58.8 NC_003401.1 + 132533 0.68 0.609722
Target:  5'- -cCCggCgCGCGGCgcGggGCGGCcGGGGg -3'
miRNA:   3'- caGGa-G-GCGUCGa-CuuCGUCGuCCCC- -5'
13206 5' -58.8 NC_003401.1 + 132799 0.68 0.608702
Target:  5'- -cCCUCCcgGCGGCgcgGAgaccaccuuucggGGCGGCGuGGGGg -3'
miRNA:   3'- caGGAGG--CGUCGa--CU-------------UCGUCGU-CCCC- -5'
13206 5' -58.8 NC_003401.1 + 14352 0.69 0.559057
Target:  5'- cGUCUggUgGCGGCUGAacGGCuccggcgccGGCAGGGGc -3'
miRNA:   3'- -CAGGa-GgCGUCGACU--UCG---------UCGUCCCC- -5'
13206 5' -58.8 NC_003401.1 + 89673 0.75 0.285742
Target:  5'- -gCCUCCGCcggAGCggGAGGaGGCAGGGGc -3'
miRNA:   3'- caGGAGGCG---UCGa-CUUCgUCGUCCCC- -5'
13206 5' -58.8 NC_003401.1 + 20883 1.1 0.001039
Target:  5'- gGUCCUCCGCAGCUGAAGCAGCAGGGGa -3'
miRNA:   3'- -CAGGAGGCGUCGACUUCGUCGUCCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.