miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13208 3' -44.8 NC_003401.1 + 28348 0.66 0.999995
Target:  5'- cGGGAGGGcgcucAugGUUcgGGugucgcgguuACCGCAGUGc -3'
miRNA:   3'- -CUUUCCC-----UugCAAaaUU----------UGGCGUCAC- -5'
13208 3' -44.8 NC_003401.1 + 132749 0.66 0.999995
Target:  5'- cGAGGGGAGCGggggacaggGGACgGCGuGUGc -3'
miRNA:   3'- cUUUCCCUUGCaaaa-----UUUGgCGU-CAC- -5'
13208 3' -44.8 NC_003401.1 + 14 0.66 0.999995
Target:  5'- cGAGGGGAGCGggggacaggGGACgGCGuGUGc -3'
miRNA:   3'- cUUUCCCUUGCaaaa-----UUUGgCGU-CAC- -5'
13208 3' -44.8 NC_003401.1 + 132510 0.66 0.999993
Target:  5'- ---cGGGGGCGgc---GGCCGCGGg- -3'
miRNA:   3'- cuuuCCCUUGCaaaauUUGGCGUCac -5'
13208 3' -44.8 NC_003401.1 + 44427 0.66 0.99999
Target:  5'- -cGAGGGuACGgugugUGAAgUCGCGGUGg -3'
miRNA:   3'- cuUUCCCuUGCaaa--AUUU-GGCGUCAC- -5'
13208 3' -44.8 NC_003401.1 + 93906 0.66 0.999987
Target:  5'- cAGAGGGGGCGgagUcuaacugcguacaaaAGGCCGaCGGUGa -3'
miRNA:   3'- cUUUCCCUUGCaaaA---------------UUUGGC-GUCAC- -5'
13208 3' -44.8 NC_003401.1 + 46052 0.66 0.99998
Target:  5'- ---cGGGAACGUUUagcgcuagccAAACUGUGGUGu -3'
miRNA:   3'- cuuuCCCUUGCAAAa---------UUUGGCGUCAC- -5'
13208 3' -44.8 NC_003401.1 + 63057 0.67 0.999972
Target:  5'- --cAGGGAAUGUcgUUGgagcgaguAGCCGUAGUa -3'
miRNA:   3'- cuuUCCCUUGCAa-AAU--------UUGGCGUCAc -5'
13208 3' -44.8 NC_003401.1 + 104624 0.67 0.999972
Target:  5'- uGAucGGaGAGCGUUccUAAAUCGCGGa- -3'
miRNA:   3'- -CUuuCC-CUUGCAAa-AUUUGGCGUCac -5'
13208 3' -44.8 NC_003401.1 + 118673 0.67 0.999962
Target:  5'- --cAGGGGGCcag--GGACCGCAGg- -3'
miRNA:   3'- cuuUCCCUUGcaaaaUUUGGCGUCac -5'
13208 3' -44.8 NC_003401.1 + 118120 0.67 0.999948
Target:  5'- gGAAAuGGGGACGguggGGGCCGCGc-- -3'
miRNA:   3'- -CUUU-CCCUUGCaaaaUUUGGCGUcac -5'
13208 3' -44.8 NC_003401.1 + 8873 0.68 0.999877
Target:  5'- --cGGGGcGCGgcgUGGACCGCAaccuGUGg -3'
miRNA:   3'- cuuUCCCuUGCaaaAUUUGGCGU----CAC- -5'
13208 3' -44.8 NC_003401.1 + 107143 0.68 0.999838
Target:  5'- uAGAGGGGACGUUUauGugUGCGcUGg -3'
miRNA:   3'- cUUUCCCUUGCAAAauUugGCGUcAC- -5'
13208 3' -44.8 NC_003401.1 + 72972 0.68 0.999838
Target:  5'- aAGAGGGcguuACGgaggGAGCCGCGGa- -3'
miRNA:   3'- cUUUCCCu---UGCaaaaUUUGGCGUCac -5'
13208 3' -44.8 NC_003401.1 + 94832 0.68 0.99979
Target:  5'- gGAAGGGGGAUGUaacauuugguUUUGAACUGCu--- -3'
miRNA:   3'- -CUUUCCCUUGCA----------AAAUUUGGCGucac -5'
13208 3' -44.8 NC_003401.1 + 28146 0.68 0.999729
Target:  5'- gGAAAGGGAACGguggcgcGACgGgCGGUGc -3'
miRNA:   3'- -CUUUCCCUUGCaaaau--UUGgC-GUCAC- -5'
13208 3' -44.8 NC_003401.1 + 16605 0.69 0.999653
Target:  5'- uGGGGGGAACaggu----CCGCAGUGa -3'
miRNA:   3'- cUUUCCCUUGcaaaauuuGGCGUCAC- -5'
13208 3' -44.8 NC_003401.1 + 62977 0.69 0.999653
Target:  5'- aGGAcGGGAGCGUUUUccaAGugUGCuGUGc -3'
miRNA:   3'- -CUUuCCCUUGCAAAA---UUugGCGuCAC- -5'
13208 3' -44.8 NC_003401.1 + 107254 0.7 0.998392
Target:  5'- --uGGGGAGCGUguauugAAugCGCGGg- -3'
miRNA:   3'- cuuUCCCUUGCAaaa---UUugGCGUCac -5'
13208 3' -44.8 NC_003401.1 + 68173 0.7 0.998193
Target:  5'- -cAAGGaGAGCGguucaucguACCGCAGUGu -3'
miRNA:   3'- cuUUCC-CUUGCaaaauu---UGGCGUCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.