Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13208 | 3' | -44.8 | NC_003401.1 | + | 26716 | 1.09 | 0.030276 |
Target: 5'- gGAAAGGGAACGUUUUAAACCGCAGUGu -3' miRNA: 3'- -CUUUCCCUUGCAAAAUUUGGCGUCAC- -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 28348 | 0.66 | 0.999995 |
Target: 5'- cGGGAGGGcgcucAugGUUcgGGugucgcgguuACCGCAGUGc -3' miRNA: 3'- -CUUUCCC-----UugCAAaaUU----------UGGCGUCAC- -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 132749 | 0.66 | 0.999995 |
Target: 5'- cGAGGGGAGCGggggacaggGGACgGCGuGUGc -3' miRNA: 3'- cUUUCCCUUGCaaaa-----UUUGgCGU-CAC- -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 14 | 0.66 | 0.999995 |
Target: 5'- cGAGGGGAGCGggggacaggGGACgGCGuGUGc -3' miRNA: 3'- cUUUCCCUUGCaaaa-----UUUGgCGU-CAC- -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 44427 | 0.66 | 0.99999 |
Target: 5'- -cGAGGGuACGgugugUGAAgUCGCGGUGg -3' miRNA: 3'- cuUUCCCuUGCaaa--AUUU-GGCGUCAC- -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 63057 | 0.67 | 0.999972 |
Target: 5'- --cAGGGAAUGUcgUUGgagcgaguAGCCGUAGUa -3' miRNA: 3'- cuuUCCCUUGCAa-AAU--------UUGGCGUCAc -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 8873 | 0.68 | 0.999877 |
Target: 5'- --cGGGGcGCGgcgUGGACCGCAaccuGUGg -3' miRNA: 3'- cuuUCCCuUGCaaaAUUUGGCGU----CAC- -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 72972 | 0.68 | 0.999838 |
Target: 5'- aAGAGGGcguuACGgaggGAGCCGCGGa- -3' miRNA: 3'- cUUUCCCu---UGCaaaaUUUGGCGUCac -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 28146 | 0.68 | 0.999729 |
Target: 5'- gGAAAGGGAACGguggcgcGACgGgCGGUGc -3' miRNA: 3'- -CUUUCCCUUGCaaaau--UUGgC-GUCAC- -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 62977 | 0.69 | 0.999653 |
Target: 5'- aGGAcGGGAGCGUUUUccaAGugUGCuGUGc -3' miRNA: 3'- -CUUuCCCUUGCAAAA---UUugGCGuCAC- -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 80207 | 0.74 | 0.980679 |
Target: 5'- gGAAGGGGGAUGUUUcucuGGuuGCAGUa -3' miRNA: 3'- -CUUUCCCUUGCAAAau--UUggCGUCAc -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 46052 | 0.66 | 0.99998 |
Target: 5'- ---cGGGAACGUUUagcgcuagccAAACUGUGGUGu -3' miRNA: 3'- cuuuCCCUUGCAAAa---------UUUGGCGUCAC- -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 104624 | 0.67 | 0.999972 |
Target: 5'- uGAucGGaGAGCGUUccUAAAUCGCGGa- -3' miRNA: 3'- -CUuuCC-CUUGCAAa-AUUUGGCGUCac -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 118673 | 0.67 | 0.999962 |
Target: 5'- --cAGGGGGCcag--GGACCGCAGg- -3' miRNA: 3'- cuuUCCCUUGcaaaaUUUGGCGUCac -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 118120 | 0.67 | 0.999948 |
Target: 5'- gGAAAuGGGGACGguggGGGCCGCGc-- -3' miRNA: 3'- -CUUU-CCCUUGCaaaaUUUGGCGUcac -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 107143 | 0.68 | 0.999838 |
Target: 5'- uAGAGGGGACGUUUauGugUGCGcUGg -3' miRNA: 3'- cUUUCCCUUGCAAAauUugGCGUcAC- -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 94832 | 0.68 | 0.99979 |
Target: 5'- gGAAGGGGGAUGUaacauuugguUUUGAACUGCu--- -3' miRNA: 3'- -CUUUCCCUUGCA----------AAAUUUGGCGucac -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 16605 | 0.69 | 0.999653 |
Target: 5'- uGGGGGGAACaggu----CCGCAGUGa -3' miRNA: 3'- cUUUCCCUUGcaaaauuuGGCGUCAC- -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 107254 | 0.7 | 0.998392 |
Target: 5'- --uGGGGAGCGUguauugAAugCGCGGg- -3' miRNA: 3'- cuuUCCCUUGCAaaa---UUugGCGUCac -5' |
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13208 | 3' | -44.8 | NC_003401.1 | + | 132510 | 0.66 | 0.999993 |
Target: 5'- ---cGGGGGCGgc---GGCCGCGGg- -3' miRNA: 3'- cuuuCCCUUGCaaaauUUGGCGUCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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