miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
13210	5'	-53.7	NC_003401.1	+	15554	0.66	0.940088
	Target:  5'- --uGUUUCGCUcaggUCCGGGCGgcAGGGc- -3' miRNA:   3'- cuuUAAAGUGG----AGGCCCGCa-UCCCca -5'
13210	5'	-53.7	NC_003401.1	+	67827	0.67	0.924478
	Target:  5'- gGggGUaaCAaUUCgUGGGCGUGGGGGUa -3' miRNA:   3'- -CuuUAaaGUgGAG-GCCCGCAUCCCCA- -5'
13210	5'	-53.7	NC_003401.1	+	23832	0.67	0.906597
	Target:  5'- --cAUUUUGCCaaaUCGcGGCGUGGGGGa -3' miRNA:   3'- cuuUAAAGUGGa--GGC-CCGCAUCCCCa -5'
13210	5'	-53.7	NC_003401.1	+	129290	0.69	0.848288
	Target:  5'- uGAAUgaaCACUUCCucGGGCGUuccuGGGGUg -3' miRNA:   3'- cUUUAaa-GUGGAGG--CCCGCAu---CCCCA- -5'
13210	5'	-53.7	NC_003401.1	+	118205	0.69	0.848288
	Target:  5'- ------gCACCg-CGGGCGcUGGGGGUg -3' miRNA:   3'- cuuuaaaGUGGagGCCCGC-AUCCCCA- -5'
13210	5'	-53.7	NC_003401.1	+	125397	0.71	0.727469
	Target:  5'- gGggGUUUUGggUCCGGGCGUgucgugAGGGGUc -3' miRNA:   3'- -CuuUAAAGUggAGGCCCGCA------UCCCCA- -5'
13210	5'	-53.7	NC_003401.1	+	117912	0.76	0.48014
	Target:  5'- cGAGGUcaCGCCgaaCCGGGCGcGGGGGUu -3' miRNA:   3'- -CUUUAaaGUGGa--GGCCCGCaUCCCCA- -5'
13210	5'	-53.7	NC_003401.1	+	32530	1.08	0.004493
	Target:  5'- aGAAAUUUCACCUCCGGGCGUAGGGGUg -3' miRNA:   3'- -CUUUAAAGUGGAGGCCCGCAUCCCCA- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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