Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13213 | 3' | -58.8 | NC_003401.1 | + | 35353 | 0.68 | 0.657716 |
Target: 5'- cCGGUUcuuuuugACGUCUGCGGU----GCGUCGg -3' miRNA: 3'- -GCCAG-------UGCAGACGCCGuaccCGCAGC- -5' |
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13213 | 3' | -58.8 | NC_003401.1 | + | 40152 | 0.67 | 0.71813 |
Target: 5'- aGGUCAgGUUgacgGgGGCAUGuccgguccGGCGUCu -3' miRNA: 3'- gCCAGUgCAGa---CgCCGUAC--------CCGCAGc -5' |
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13213 | 3' | -58.8 | NC_003401.1 | + | 41731 | 1.09 | 0.001455 |
Target: 5'- aCGGUCACGUCUGCGGCAUGGGCGUCGa -3' miRNA: 3'- -GCCAGUGCAGACGCCGUACCCGCAGC- -5' |
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13213 | 3' | -58.8 | NC_003401.1 | + | 42986 | 0.72 | 0.454513 |
Target: 5'- aGGUaACGUCUGCaGUAacGGGCGUCa -3' miRNA: 3'- gCCAgUGCAGACGcCGUa-CCCGCAGc -5' |
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13213 | 3' | -58.8 | NC_003401.1 | + | 44117 | 0.66 | 0.763911 |
Target: 5'- uGGUCguguacaGCGUCaccuCGGCuagguugacgucgGUGGGCGUCGu -3' miRNA: 3'- gCCAG-------UGCAGac--GCCG-------------UACCCGCAGC- -5' |
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13213 | 3' | -58.8 | NC_003401.1 | + | 69335 | 0.74 | 0.354682 |
Target: 5'- cCGG-CACGUCU-CGGCAgguggaaggguccgcGGGCGUCGa -3' miRNA: 3'- -GCCaGUGCAGAcGCCGUa--------------CCCGCAGC- -5' |
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13213 | 3' | -58.8 | NC_003401.1 | + | 79853 | 0.66 | 0.784085 |
Target: 5'- gCGGUUGCGguugcagacgccUCgGUGGCcgGGGCGgUCa -3' miRNA: 3'- -GCCAGUGC------------AGaCGCCGuaCCCGC-AGc -5' |
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13213 | 3' | -58.8 | NC_003401.1 | + | 82357 | 0.68 | 0.698518 |
Target: 5'- uGG-CACGagugUCUGUGGC--GGGCGUUGu -3' miRNA: 3'- gCCaGUGC----AGACGCCGuaCCCGCAGC- -5' |
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13213 | 3' | -58.8 | NC_003401.1 | + | 87983 | 0.66 | 0.79305 |
Target: 5'- uGG-CACGagugUCUGUGGC--GGGCGUgCGg -3' miRNA: 3'- gCCaGUGC----AGACGCCGuaCCCGCA-GC- -5' |
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13213 | 3' | -58.8 | NC_003401.1 | + | 103347 | 0.7 | 0.578606 |
Target: 5'- gCGGUagccguagaaACGgcCUGUGGCGuggguaUGGGCGUCGg -3' miRNA: 3'- -GCCAg---------UGCa-GACGCCGU------ACCCGCAGC- -5' |
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13213 | 3' | -58.8 | NC_003401.1 | + | 118630 | 0.66 | 0.79305 |
Target: 5'- aCGGgaggCGCGccgcUUGCGuGCGUGaGGUGUCGc -3' miRNA: 3'- -GCCa---GUGCa---GACGC-CGUAC-CCGCAGC- -5' |
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13213 | 3' | -58.8 | NC_003401.1 | + | 127888 | 0.68 | 0.698518 |
Target: 5'- cCGGUgCGCGccagCUGCuGGCAgUGGaGUGUCGc -3' miRNA: 3'- -GCCA-GUGCa---GACG-CCGU-ACC-CGCAGC- -5' |
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13213 | 3' | -58.8 | NC_003401.1 | + | 132525 | 0.66 | 0.784085 |
Target: 5'- gCGG-CGCGgg-GCGGCcggGGGCGgCGg -3' miRNA: 3'- -GCCaGUGCagaCGCCGua-CCCGCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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