miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13214 3' -55.3 NC_003401.1 + 124272 0.66 0.923763
Target:  5'- aCgGGGCCUCCggcuuucucugCGUG-UGUGugUCuuuaaucguGGCg -3'
miRNA:   3'- -GgUCCGGAGG-----------GCACaACACugAG---------UCG- -5'
13214 3' -55.3 NC_003401.1 + 128273 0.66 0.923212
Target:  5'- uCCAGcGCCUCCCGUGcgaaaacGUaacccacauagcuGACUCAu- -3'
miRNA:   3'- -GGUC-CGGAGGGCACaa-----CA-------------CUGAGUcg -5'
13214 3' -55.3 NC_003401.1 + 121225 0.66 0.90619
Target:  5'- uUCAGGagcuucguCCUCgUGggaGUUGUGACUCGuGCa -3'
miRNA:   3'- -GGUCC--------GGAGgGCa--CAACACUGAGU-CG- -5'
13214 3' -55.3 NC_003401.1 + 19534 0.67 0.872197
Target:  5'- cCCAGGCC-CCgGUGU----ACaUCAGCa -3'
miRNA:   3'- -GGUCCGGaGGgCACAacacUG-AGUCG- -5'
13214 3' -55.3 NC_003401.1 + 94916 0.67 0.872197
Target:  5'- gUCAGGCUU-CCGUG-UGUaACUUGGCa -3'
miRNA:   3'- -GGUCCGGAgGGCACaACAcUGAGUCG- -5'
13214 3' -55.3 NC_003401.1 + 28895 0.68 0.849152
Target:  5'- cCCAGGCaaaauaUCCCGUG-UGUuACUUGGa -3'
miRNA:   3'- -GGUCCGg-----AGGGCACaACAcUGAGUCg -5'
13214 3' -55.3 NC_003401.1 + 126169 0.68 0.841063
Target:  5'- gCCGGGCCa-CCGUGUgcggcaccGUGGgUCAGg -3'
miRNA:   3'- -GGUCCGGagGGCACAa-------CACUgAGUCg -5'
13214 3' -55.3 NC_003401.1 + 20130 0.68 0.832781
Target:  5'- gCAGaGCC-CCCGggacGUUGUu-CUCAGCg -3'
miRNA:   3'- gGUC-CGGaGGGCa---CAACAcuGAGUCG- -5'
13214 3' -55.3 NC_003401.1 + 115252 0.69 0.806858
Target:  5'- gCAGGUCcCCCGgugGgaGcGGCUCGGCu -3'
miRNA:   3'- gGUCCGGaGGGCa--CaaCaCUGAGUCG- -5'
13214 3' -55.3 NC_003401.1 + 114378 0.82 0.186503
Target:  5'- aCUAGGCUuuguagUCCCGUGUUGUGAUuuggggagggcggUCAGCg -3'
miRNA:   3'- -GGUCCGG------AGGGCACAACACUG-------------AGUCG- -5'
13214 3' -55.3 NC_003401.1 + 41949 1.14 0.001376
Target:  5'- cCCAGGCCUCCCGUGUUGUGACUCAGCg -3'
miRNA:   3'- -GGUCCGGAGGGCACAACACUGAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.