miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13214 5' -53.5 NC_003401.1 + 57508 0.66 0.962129
Target:  5'- gGACCGCgguuacgucgagccuUCGCGgucuuccaaacACGAgCGGGAGGUGu -3'
miRNA:   3'- aCUGGUG---------------AGUGC-----------UGCU-GCCCUCUAUg -5'
13214 5' -53.5 NC_003401.1 + 123033 0.66 0.956981
Target:  5'- -uGCCACcCugGAgGACGaGGGGUGCu -3'
miRNA:   3'- acUGGUGaGugCUgCUGCcCUCUAUG- -5'
13214 5' -53.5 NC_003401.1 + 29004 0.66 0.956981
Target:  5'- uUGGCCcugGCgUCACGGCucGCGGGGGAc-- -3'
miRNA:   3'- -ACUGG---UG-AGUGCUGc-UGCCCUCUaug -5'
13214 5' -53.5 NC_003401.1 + 106130 0.67 0.934786
Target:  5'- aGACCugUCGCucguCGuGCGGGuggagGGAUGCg -3'
miRNA:   3'- aCUGGugAGUGcu--GC-UGCCC-----UCUAUG- -5'
13214 5' -53.5 NC_003401.1 + 47157 0.67 0.929612
Target:  5'- -cGCUA-UCACGuauGCGACGGGGGAcGCa -3'
miRNA:   3'- acUGGUgAGUGC---UGCUGCCCUCUaUG- -5'
13214 5' -53.5 NC_003401.1 + 118833 0.67 0.924188
Target:  5'- cGGCCcCUCGCGuuG-CGGGGGucAUACg -3'
miRNA:   3'- aCUGGuGAGUGCugCuGCCCUC--UAUG- -5'
13214 5' -53.5 NC_003401.1 + 121758 0.67 0.924188
Target:  5'- aGAcCCGCUUgGCGACGGCGuuGGAGAUcccaACa -3'
miRNA:   3'- aCU-GGUGAG-UGCUGCUGC--CCUCUA----UG- -5'
13214 5' -53.5 NC_003401.1 + 107129 0.68 0.893371
Target:  5'- cGGCCGguugcUUCACGACGAaucGGAGGUGg -3'
miRNA:   3'- aCUGGU-----GAGUGCUGCUgc-CCUCUAUg -5'
13214 5' -53.5 NC_003401.1 + 120144 0.69 0.856642
Target:  5'- cGGCCcccagcCUCugaaacCGcCGACGGGGGAUGCu -3'
miRNA:   3'- aCUGGu-----GAGu-----GCuGCUGCCCUCUAUG- -5'
13214 5' -53.5 NC_003401.1 + 132782 0.7 0.84043
Target:  5'- aGACCACcuuUCGgGGCGGCGuGGGGGa-- -3'
miRNA:   3'- aCUGGUG---AGUgCUGCUGC-CCUCUaug -5'
13214 5' -53.5 NC_003401.1 + 99351 0.7 0.814658
Target:  5'- cGAacaUGCUCACGACGAUGGGu--UGCc -3'
miRNA:   3'- aCUg--GUGAGUGCUGCUGCCCucuAUG- -5'
13214 5' -53.5 NC_003401.1 + 129523 0.71 0.796601
Target:  5'- -aACCGCUCACGGucUGaACGGGAGGa-- -3'
miRNA:   3'- acUGGUGAGUGCU--GC-UGCCCUCUaug -5'
13214 5' -53.5 NC_003401.1 + 21125 0.71 0.777927
Target:  5'- cUGAUCGCUCACGucACGGgccugacccCGGGAGAcuuugUGCa -3'
miRNA:   3'- -ACUGGUGAGUGC--UGCU---------GCCCUCU-----AUG- -5'
13214 5' -53.5 NC_003401.1 + 18732 0.72 0.708801
Target:  5'- -cGCCACUCugGGCGAUcGGGGAa-- -3'
miRNA:   3'- acUGGUGAGugCUGCUGcCCUCUaug -5'
13214 5' -53.5 NC_003401.1 + 41993 1.11 0.00357
Target:  5'- uUGACCACUCACGACGACGGGAGAUACg -3'
miRNA:   3'- -ACUGGUGAGUGCUGCUGCCCUCUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.