miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13215 3' -48.2 NC_003401.1 + 101114 0.66 0.999322
Target:  5'- cGAAgACGCgacagaGGaCACGGAugGCGCGu -3'
miRNA:   3'- aCUUgUGUGa-----UCaGUGCCUuaUGCGC- -5'
13215 3' -48.2 NC_003401.1 + 14217 0.66 0.999161
Target:  5'- cGGGgGCGCUAgaggguGUCGgGGAccggccggGUGCGCGa -3'
miRNA:   3'- aCUUgUGUGAU------CAGUgCCU--------UAUGCGC- -5'
13215 3' -48.2 NC_003401.1 + 44248 0.66 0.998741
Target:  5'- --uACGCACccg-CGCGGAAUuaACGCGg -3'
miRNA:   3'- acuUGUGUGaucaGUGCCUUA--UGCGC- -5'
13215 3' -48.2 NC_003401.1 + 94234 0.66 0.998741
Target:  5'- cGAACgguGCGCc-GUUACGGAGgugACGUGg -3'
miRNA:   3'- aCUUG---UGUGauCAGUGCCUUa--UGCGC- -5'
13215 3' -48.2 NC_003401.1 + 82969 0.67 0.996854
Target:  5'- -cGGCACuacuGCUAuGUUACGGGGguUGCGCGa -3'
miRNA:   3'- acUUGUG----UGAU-CAGUGCCUU--AUGCGC- -5'
13215 3' -48.2 NC_003401.1 + 88300 0.67 0.996854
Target:  5'- cGAGCAUGCUaaAGUggCugGGGAaggagaucaUACGCGg -3'
miRNA:   3'- aCUUGUGUGA--UCA--GugCCUU---------AUGCGC- -5'
13215 3' -48.2 NC_003401.1 + 62583 0.68 0.994874
Target:  5'- -uGugAC-CUAGUCACGccGUACGCGu -3'
miRNA:   3'- acUugUGuGAUCAGUGCcuUAUGCGC- -5'
13215 3' -48.2 NC_003401.1 + 36317 0.68 0.994794
Target:  5'- -uGGCGCGCUGcauaauuGUCACGGuGUuaaACGCGg -3'
miRNA:   3'- acUUGUGUGAU-------CAGUGCCuUA---UGCGC- -5'
13215 3' -48.2 NC_003401.1 + 23014 0.68 0.993066
Target:  5'- uUGGGCccCGCgcGUCugGGggUGCGUu -3'
miRNA:   3'- -ACUUGu-GUGauCAGugCCuuAUGCGc -5'
13215 3' -48.2 NC_003401.1 + 87586 0.68 0.993066
Target:  5'- uUGAAUACGCgAGaUgGCGGA--ACGCGa -3'
miRNA:   3'- -ACUUGUGUGaUC-AgUGCCUuaUGCGC- -5'
13215 3' -48.2 NC_003401.1 + 121156 0.7 0.980276
Target:  5'- cGGGCGCGggGGgCGCGGGggGCGCGc -3'
miRNA:   3'- aCUUGUGUgaUCaGUGCCUuaUGCGC- -5'
13215 3' -48.2 NC_003401.1 + 82852 0.71 0.969463
Target:  5'- cGAGCACACgaccUCACGGuAAUugGUa -3'
miRNA:   3'- aCUUGUGUGauc-AGUGCC-UUAugCGc -5'
13215 3' -48.2 NC_003401.1 + 49249 0.71 0.962704
Target:  5'- aGAauGCGCAgUGGUCGCGGuGUauacccgaacaaACGCGg -3'
miRNA:   3'- aCU--UGUGUgAUCAGUGCCuUA------------UGCGC- -5'
13215 3' -48.2 NC_003401.1 + 7403 0.73 0.936404
Target:  5'- aUGuGCACGCUAuGUCACGGcAAcACGCc -3'
miRNA:   3'- -ACuUGUGUGAU-CAGUGCC-UUaUGCGc -5'
13215 3' -48.2 NC_003401.1 + 123671 0.74 0.900553
Target:  5'- gGAACaaaACACUAGaCACGGGGgacACGCGc -3'
miRNA:   3'- aCUUG---UGUGAUCaGUGCCUUa--UGCGC- -5'
13215 3' -48.2 NC_003401.1 + 116558 0.75 0.871413
Target:  5'- gGGGCGCAgcaUGGUCGCGGGAggcuggcauUGCGCa -3'
miRNA:   3'- aCUUGUGUg--AUCAGUGCCUU---------AUGCGc -5'
13215 3' -48.2 NC_003401.1 + 58699 0.77 0.772953
Target:  5'- uUGAAcCGCACUAGggGCGGAAcGCGCa -3'
miRNA:   3'- -ACUU-GUGUGAUCagUGCCUUaUGCGc -5'
13215 3' -48.2 NC_003401.1 + 43129 1.11 0.011323
Target:  5'- cUGAACACACUAGUCACGGAAUACGCGg -3'
miRNA:   3'- -ACUUGUGUGAUCAGUGCCUUAUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.