miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13216 5' -49.2 NC_003401.1 + 112351 0.66 0.995613
Target:  5'- -gAACCCCAUGuuugacgaGuGUCCGAAugAUGa- -3'
miRNA:   3'- aaUUGGGGUAC--------C-CAGGUUUugUACag -5'
13216 5' -49.2 NC_003401.1 + 8272 0.66 0.993983
Target:  5'- -gGACCCCGcgucGGuGUCgaagaagucgCAGAACAUGUCc -3'
miRNA:   3'- aaUUGGGGUa---CC-CAG----------GUUUUGUACAG- -5'
13216 5' -49.2 NC_003401.1 + 60180 0.67 0.991898
Target:  5'- --uGCUCCGc-GGUCCuguGACAUGUCa -3'
miRNA:   3'- aauUGGGGUacCCAGGuu-UUGUACAG- -5'
13216 5' -49.2 NC_003401.1 + 118265 0.67 0.99178
Target:  5'- --uGCCgCCcgGGGUcgccggcgggucaCCGAAACAUGUa -3'
miRNA:   3'- aauUGG-GGuaCCCA-------------GGUUUUGUACAg -5'
13216 5' -49.2 NC_003401.1 + 118138 0.67 0.989277
Target:  5'- --cGCCCCAUGGGcaCCGGAcggcacCAUGUg -3'
miRNA:   3'- aauUGGGGUACCCa-GGUUUu-----GUACAg -5'
13216 5' -49.2 NC_003401.1 + 75354 0.67 0.986038
Target:  5'- -cAGCUCCAgucaGGG-CCAGAGCuugGUCa -3'
miRNA:   3'- aaUUGGGGUa---CCCaGGUUUUGua-CAG- -5'
13216 5' -49.2 NC_003401.1 + 27247 0.68 0.984161
Target:  5'- -cGACCCCAguugUGGcGUCCGuc-CGUGUUu -3'
miRNA:   3'- aaUUGGGGU----ACC-CAGGUuuuGUACAG- -5'
13216 5' -49.2 NC_003401.1 + 14224 0.68 0.984161
Target:  5'- -gGACgCCcgGGGgcgCUAGAGgGUGUCg -3'
miRNA:   3'- aaUUGgGGuaCCCa--GGUUUUgUACAG- -5'
13216 5' -49.2 NC_003401.1 + 125385 0.7 0.947877
Target:  5'- ---gUCCCAcuggucggggguuuUGGGUCCG-GGCGUGUCg -3'
miRNA:   3'- aauuGGGGU--------------ACCCAGGUuUUGUACAG- -5'
13216 5' -49.2 NC_003401.1 + 44844 0.74 0.785912
Target:  5'- -aGACCCgGUGGGUCCAuguACggGUUu -3'
miRNA:   3'- aaUUGGGgUACCCAGGUuu-UGuaCAG- -5'
13216 5' -49.2 NC_003401.1 + 44722 1.09 0.009387
Target:  5'- gUUAACCCCAUGGGUCCAAAACAUGUCa -3'
miRNA:   3'- -AAUUGGGGUACCCAGGUUUUGUACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.