miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13218 5' -46.3 NC_003401.1 + 85443 0.66 0.99996
Target:  5'- aGGAcGCUuuGaaaugGCUCGUggAUGGAAUa -3'
miRNA:   3'- -CCU-UGAggCa----UGAGCAaaUGCCUUAg -5'
13218 5' -46.3 NC_003401.1 + 71952 0.66 0.999928
Target:  5'- aGGGugUCCcaccugacuGUgACUCGc--GCGGAGUCg -3'
miRNA:   3'- -CCUugAGG---------CA-UGAGCaaaUGCCUUAG- -5'
13218 5' -46.3 NC_003401.1 + 52454 0.67 0.999838
Target:  5'- uGGACcgCCGUGCUCGgacGCGGc-UCg -3'
miRNA:   3'- cCUUGa-GGCAUGAGCaaaUGCCuuAG- -5'
13218 5' -46.3 NC_003401.1 + 12252 0.67 0.999791
Target:  5'- -cGACUCaaCGUGCUCGgucGCGGAGa- -3'
miRNA:   3'- ccUUGAG--GCAUGAGCaaaUGCCUUag -5'
13218 5' -46.3 NC_003401.1 + 109624 0.67 0.999791
Target:  5'- cGGGCUCCGUGgcccgcccUUCGggguCGGAGUUg -3'
miRNA:   3'- cCUUGAGGCAU--------GAGCaaauGCCUUAG- -5'
13218 5' -46.3 NC_003401.1 + 88893 0.68 0.999461
Target:  5'- aGGAaaagACUCUGgu-UCGUUUACcuuGGAAUCa -3'
miRNA:   3'- -CCU----UGAGGCaugAGCAAAUG---CCUUAG- -5'
13218 5' -46.3 NC_003401.1 + 56875 0.7 0.997358
Target:  5'- uGGAUUCCGUAaaCGagUACGGAGUUc -3'
miRNA:   3'- cCUUGAGGCAUgaGCaaAUGCCUUAG- -5'
13218 5' -46.3 NC_003401.1 + 105836 0.73 0.982344
Target:  5'- uGGGCugUCCGUACUCGUacgGCGGGugcUCg -3'
miRNA:   3'- cCUUG--AGGCAUGAGCAaa-UGCCUu--AG- -5'
13218 5' -46.3 NC_003401.1 + 121228 0.73 0.980133
Target:  5'- aGGAGCUUCGUcCUCGUg---GGAGUUg -3'
miRNA:   3'- -CCUUGAGGCAuGAGCAaaugCCUUAG- -5'
13218 5' -46.3 NC_003401.1 + 94547 0.81 0.697675
Target:  5'- gGGGACUCCGU-UUCGUggaugggaGCGGAGUCg -3'
miRNA:   3'- -CCUUGAGGCAuGAGCAaa------UGCCUUAG- -5'
13218 5' -46.3 NC_003401.1 + 56714 1.13 0.01608
Target:  5'- gGGAACUCCGUACUCGUUUACGGAAUCc -3'
miRNA:   3'- -CCUUGAGGCAUGAGCAAAUGCCUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.