miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13220 5' -59.4 NC_003401.1 + 117783 0.66 0.779396
Target:  5'- aGCCgucaaucaaacuaACCCGCGGcGgccaugGUCGCCgcggCCgUCUg -3'
miRNA:   3'- -CGG-------------UGGGCGCC-Ca-----UAGUGGa---GGgAGG- -5'
13220 5' -59.4 NC_003401.1 + 21279 0.66 0.771207
Target:  5'- cGCgGaCCuCGCGcGG-AUgGCuCUCCCUCCu -3'
miRNA:   3'- -CGgU-GG-GCGC-CCaUAgUG-GAGGGAGG- -5'
13220 5' -59.4 NC_003401.1 + 18924 0.66 0.771207
Target:  5'- cCCGCCCG-GGGUGUU-CCUacaCUUUCCa -3'
miRNA:   3'- cGGUGGGCgCCCAUAGuGGA---GGGAGG- -5'
13220 5' -59.4 NC_003401.1 + 132573 0.66 0.771207
Target:  5'- gGCCcCCCGCGGG----ACC-CCCggCCc -3'
miRNA:   3'- -CGGuGGGCGCCCauagUGGaGGGa-GG- -5'
13220 5' -59.4 NC_003401.1 + 120011 0.66 0.761997
Target:  5'- gGCCACCgGCGG---UCugCcCCCgUCCc -3'
miRNA:   3'- -CGGUGGgCGCCcauAGugGaGGG-AGG- -5'
13220 5' -59.4 NC_003401.1 + 132351 0.66 0.743257
Target:  5'- gGCCcggGCCCGCGGccgcCGCC-CCCggCCg -3'
miRNA:   3'- -CGG---UGGGCGCCcauaGUGGaGGGa-GG- -5'
13220 5' -59.4 NC_003401.1 + 28850 0.67 0.724148
Target:  5'- cCCACCCGCGuuucagCACgUCUCUCUg -3'
miRNA:   3'- cGGUGGGCGCccaua-GUGgAGGGAGG- -5'
13220 5' -59.4 NC_003401.1 + 118640 0.67 0.717384
Target:  5'- cGCCGCuuGCGugcgugaGGUGUCGCCggugggccguaugaCCC-CCg -3'
miRNA:   3'- -CGGUGggCGC-------CCAUAGUGGa-------------GGGaGG- -5'
13220 5' -59.4 NC_003401.1 + 22708 0.67 0.714475
Target:  5'- aGCCACCUGaCGcacg-UGCCUCCCgUCCa -3'
miRNA:   3'- -CGGUGGGC-GCccauaGUGGAGGG-AGG- -5'
13220 5' -59.4 NC_003401.1 + 132587 0.67 0.69494
Target:  5'- cGCCGCCCGgcaUGGcgGUCcuccgccgGCCUCcCCUCCc -3'
miRNA:   3'- -CGGUGGGC---GCCcaUAG--------UGGAG-GGAGG- -5'
13220 5' -59.4 NC_003401.1 + 119978 0.67 0.682131
Target:  5'- gGCCGCCUGCGcgcuguuuagccucGGUGccgcugCGCCg-CCUCCg -3'
miRNA:   3'- -CGGUGGGCGC--------------CCAUa-----GUGGagGGAGG- -5'
13220 5' -59.4 NC_003401.1 + 33615 0.68 0.655335
Target:  5'- uGCCACCa-UGGGUAUCAUaCUCUgUUCa -3'
miRNA:   3'- -CGGUGGgcGCCCAUAGUG-GAGGgAGG- -5'
13220 5' -59.4 NC_003401.1 + 118328 0.69 0.595543
Target:  5'- gGUCGCCCGCGGGUcacugaaagauGUgCACauggugCCgUCCg -3'
miRNA:   3'- -CGGUGGGCGCCCA-----------UA-GUGga----GGgAGG- -5'
13220 5' -59.4 NC_003401.1 + 16236 0.69 0.565896
Target:  5'- cGCCGCCa--GGGUG-CGCCggaucgCCCUUCg -3'
miRNA:   3'- -CGGUGGgcgCCCAUaGUGGa-----GGGAGG- -5'
13220 5' -59.4 NC_003401.1 + 20595 0.69 0.565896
Target:  5'- gGCCGCCaacccccaaCGCGGGgccgCGCCcuggaacgcgguUCCUUCCa -3'
miRNA:   3'- -CGGUGG---------GCGCCCaua-GUGG------------AGGGAGG- -5'
13220 5' -59.4 NC_003401.1 + 118480 0.7 0.527008
Target:  5'- cCCACCCGUGGGagaaaCcCCUCCgUUCCg -3'
miRNA:   3'- cGGUGGGCGCCCaua--GuGGAGG-GAGG- -5'
13220 5' -59.4 NC_003401.1 + 87367 0.7 0.527008
Target:  5'- uCCACuCCG-GGGUAUCGCUUagaCUCCa -3'
miRNA:   3'- cGGUG-GGCgCCCAUAGUGGAgg-GAGG- -5'
13220 5' -59.4 NC_003401.1 + 118830 0.7 0.517438
Target:  5'- uGCCACCUguuGCGGagaucccccGUgcgcAUCGCCgCCCUCCu -3'
miRNA:   3'- -CGGUGGG---CGCC---------CA----UAGUGGaGGGAGG- -5'
13220 5' -59.4 NC_003401.1 + 87150 0.7 0.507936
Target:  5'- gGCCuuGCUCG-GcGGUGUCAgCUCCCUCa -3'
miRNA:   3'- -CGG--UGGGCgC-CCAUAGUgGAGGGAGg -5'
13220 5' -59.4 NC_003401.1 + 58208 0.71 0.47072
Target:  5'- uGCCACgCgCGUGGGUAaaaucggCGCCcauaugCCCUCCc -3'
miRNA:   3'- -CGGUG-G-GCGCCCAUa------GUGGa-----GGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.