Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13220 | 5' | -59.4 | NC_003401.1 | + | 62582 | 1.14 | 0.000648 |
Target: 5'- cGCCACCCGCGGGUAUCACCUCCCUCCa -3' miRNA: 3'- -CGGUGGGCGCCCAUAGUGGAGGGAGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 124253 | 0.75 | 0.275993 |
Target: 5'- cGCCGCCCGUGGGUcaagCACggggCCUCCg -3' miRNA: 3'- -CGGUGGGCGCCCAua--GUGgag-GGAGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 132443 | 0.72 | 0.434941 |
Target: 5'- gGCCGCCCcCGGGUGccgcucCGCCgggCCCggCCg -3' miRNA: 3'- -CGGUGGGcGCCCAUa-----GUGGa--GGGa-GG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 58208 | 0.71 | 0.47072 |
Target: 5'- uGCCACgCgCGUGGGUAaaaucggCGCCcauaugCCCUCCc -3' miRNA: 3'- -CGGUG-G-GCGCCCAUa------GUGGa-----GGGAGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 87150 | 0.7 | 0.507936 |
Target: 5'- gGCCuuGCUCG-GcGGUGUCAgCUCCCUCa -3' miRNA: 3'- -CGG--UGGGCgC-CCAUAGUgGAGGGAGg -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 118830 | 0.7 | 0.517438 |
Target: 5'- uGCCACCUguuGCGGagaucccccGUgcgcAUCGCCgCCCUCCu -3' miRNA: 3'- -CGGUGGG---CGCC---------CA----UAGUGGaGGGAGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 118480 | 0.7 | 0.527008 |
Target: 5'- cCCACCCGUGGGagaaaCcCCUCCgUUCCg -3' miRNA: 3'- cGGUGGGCGCCCaua--GuGGAGG-GAGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 87367 | 0.7 | 0.527008 |
Target: 5'- uCCACuCCG-GGGUAUCGCUUagaCUCCa -3' miRNA: 3'- cGGUG-GGCgCCCAUAGUGGAgg-GAGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 20595 | 0.69 | 0.565896 |
Target: 5'- gGCCGCCaacccccaaCGCGGGgccgCGCCcuggaacgcgguUCCUUCCa -3' miRNA: 3'- -CGGUGG---------GCGCCCaua-GUGG------------AGGGAGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 16236 | 0.69 | 0.565896 |
Target: 5'- cGCCGCCa--GGGUG-CGCCggaucgCCCUUCg -3' miRNA: 3'- -CGGUGGgcgCCCAUaGUGGa-----GGGAGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 118328 | 0.69 | 0.595543 |
Target: 5'- gGUCGCCCGCGGGUcacugaaagauGUgCACauggugCCgUCCg -3' miRNA: 3'- -CGGUGGGCGCCCA-----------UA-GUGga----GGgAGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 33615 | 0.68 | 0.655335 |
Target: 5'- uGCCACCa-UGGGUAUCAUaCUCUgUUCa -3' miRNA: 3'- -CGGUGGgcGCCCAUAGUG-GAGGgAGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 119978 | 0.67 | 0.682131 |
Target: 5'- gGCCGCCUGCGcgcuguuuagccucGGUGccgcugCGCCg-CCUCCg -3' miRNA: 3'- -CGGUGGGCGC--------------CCAUa-----GUGGagGGAGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 132587 | 0.67 | 0.69494 |
Target: 5'- cGCCGCCCGgcaUGGcgGUCcuccgccgGCCUCcCCUCCc -3' miRNA: 3'- -CGGUGGGC---GCCcaUAG--------UGGAG-GGAGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 22708 | 0.67 | 0.714475 |
Target: 5'- aGCCACCUGaCGcacg-UGCCUCCCgUCCa -3' miRNA: 3'- -CGGUGGGC-GCccauaGUGGAGGG-AGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 118640 | 0.67 | 0.717384 |
Target: 5'- cGCCGCuuGCGugcgugaGGUGUCGCCggugggccguaugaCCC-CCg -3' miRNA: 3'- -CGGUGggCGC-------CCAUAGUGGa-------------GGGaGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 28850 | 0.67 | 0.724148 |
Target: 5'- cCCACCCGCGuuucagCACgUCUCUCUg -3' miRNA: 3'- cGGUGGGCGCccaua-GUGgAGGGAGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 132351 | 0.66 | 0.743257 |
Target: 5'- gGCCcggGCCCGCGGccgcCGCC-CCCggCCg -3' miRNA: 3'- -CGG---UGGGCGCCcauaGUGGaGGGa-GG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 120011 | 0.66 | 0.761997 |
Target: 5'- gGCCACCgGCGG---UCugCcCCCgUCCc -3' miRNA: 3'- -CGGUGGgCGCCcauAGugGaGGG-AGG- -5' |
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13220 | 5' | -59.4 | NC_003401.1 | + | 132573 | 0.66 | 0.771207 |
Target: 5'- gGCCcCCCGCGGG----ACC-CCCggCCc -3' miRNA: 3'- -CGGuGGGCGCCCauagUGGaGGGa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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